Package: rentrez 1.2.3

David Winter

rentrez: 'Entrez' in R

Provides an R interface to the NCBI's 'EUtils' API, allowing users to search databases like 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and 'PubMed' <https://pubmed.ncbi.nlm.nih.gov/>, process the results of those searches and pull data into their R sessions.

Authors:David Winter [aut, cre], Scott Chamberlain [ctb], Han Guangchun [ctb]

rentrez_1.2.3.tar.gz
rentrez_1.2.3.zip(r-4.5)rentrez_1.2.3.zip(r-4.4)rentrez_1.2.3.zip(r-4.3)
rentrez_1.2.3.tgz(r-4.5-any)rentrez_1.2.3.tgz(r-4.4-any)rentrez_1.2.3.tgz(r-4.3-any)
rentrez_1.2.3.tar.gz(r-4.5-noble)rentrez_1.2.3.tar.gz(r-4.4-noble)
rentrez_1.2.3.tgz(r-4.4-emscripten)rentrez_1.2.3.tgz(r-4.3-emscripten)
rentrez.pdf |rentrez.html✨
rentrez/json (API)
NEWS

# Install 'rentrez' in R:
install.packages('rentrez', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/rentrez/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

Conda:

13.60 score 199 stars 95 packages 784 scripts 22k downloads 36 mentions 16 exports 9 dependencies

Last updated 4 years agofrom:a225f21387 (on master). Checks:3 OK, 5 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 25 2025
R-4.5-winNOTEFeb 25 2025
R-4.5-macNOTEFeb 25 2025
R-4.5-linuxNOTEFeb 25 2025
R-4.4-winNOTEFeb 25 2025
R-4.4-macNOTEFeb 25 2025
R-4.3-winOKFeb 25 2025
R-4.3-macOKFeb 25 2025

Exports:entrez_citmatchentrez_db_linksentrez_db_searchableentrez_db_summaryentrez_dbsentrez_fetchentrez_global_queryentrez_infoentrez_linkentrez_postentrez_searchentrez_summaryextract_from_esummarylinkout_urlsparse_pubmed_xmlset_entrez_key

Dependencies:askpasscurlhttrjsonlitemimeopensslR6sysXML

Rentrez Tutorial

David winter

Rendered fromrentrez_tutorial.Rmdusingknitr::rmarkdownon Feb 25 2025.

Last update: 2020-11-10
Started: 2014-06-27