Changes in version 0.7.7 (2025-02-20) - Fixed issues querying mab and donor information. - Added workarounds for errors and warnings when trying to verify certs and querying the database with GROUP_CONCAT operations. Changes in version 0.7.6 (2022-06-24) - Add new feature adding LANL metadata to NAb mAb data pulls. - Add new list of virus name mapping tables as an active binding. Changes in version 0.7.5 (2021-09-02) - Fixed bug concerning missing cookie session name for app reports which will update this package to work when run on CDS as in a report. - Show NI data in available datasets active binding which will allow users to look for NI (non-integrated) data in DSR. - Set active binding names to snake case which is in effort to standardize fields names used in the API. - Add all authors to publication table which will allow users to find publication by authors who were not listed as the primary author. Changes in version 0.7.4 (2020-08-26) - Added virusMetadata field to DataSpaceConnection which shows virus metadata for viruses used in NAb assays (thanks @helenmiller16 #26) - Added availablePublications field to DataSpaceConnection which summarizes all available publications (thanks @helenmiller16 #27) - Added downloadPublicationData method to DataSpaceConnection which will download available publication data for a specified publication (thanks @helenmiller16 #27) - Added a vignette: Accessing Publication Data (thanks @helenmiller16 #27) - Made PKMAb dataset available to retrieve in DataSpaceStudy (thanks @helenmiller16 and @jmtaylor-fhcrc #27) - Relaxed some assumptions when pulling non-integrated data, which allows users to pull non-integrated mab data, like in cvd812. (thanks @helenmiller16 #28) - Fixed a test for mabGridSummary$geometric_mean_curve_ic50 calculation to reflect updated data. (thanks @helenmiller16 #28) - Updated documentation using the R6 documentation syntax in roxygen Changes in version 0.7.3 (2020-01-08) - Remove tolower in functions that check study names. (thanks @jmtaylor-fhcrc #23) - Update DataSpaceStudy methods for non-integrated datasets. (thanks @helenmiller16 #24) Changes in version 0.7.2 (2019-08-21) - Fix broken and invalid URLs for CRAN submission Changes in version 0.7.1 - Fix broken and invalid URLs for CRAN submission Changes in version 0.7.0 - Added DataSpaceMab class and several methods and fields in DataSpaceConnection to allow access to monoclonal antibody data (thanks @jmtaylor-fhcrc #14, #19, #21) Changes in version 0.6.3 (2019-04-05) - Prepare for CRAN submission Changes in version 0.6.2 - Write the netrc in temporary directory as default in writeNetrc. (CRAN requirement) Changes in version 0.6.1 - Remove LICENSE file for CRAN submission Changes in version 0.6.0 - rOpenSci submission: https://github.com/ropensci/software-review/issues/261 Changes in version 0.5.2 - Modified getDataset method in DataSpaceStudy to take mergeExtra as an argument in order to merge extra information (demographics and treatment arm). #5 Changes in version 0.5.1 - Adjusted the package to use the latest version of Rlabkey (v2.2) and httr packages. Changes in version 0.5.0 - Modified DataSpaceConnection and DataSpaceStudy classes to convert data.frame objects to data.table. - Added a package startup message on the terms of use. - Created getGroup method in DataSpaceConnection class and deprecated groupId in getStudy method. Changes in version 0.4.2 - Added refresh method for both connection and study classes. - Added studyInfo field in study class. Changes in version 0.4.1 - Included additional columns (short_name, type, status, stage, species, start_date, strategy) in availableStudies. - Updated the introductory vignette. Changes in version 0.4.0 - Added availableGroups field to DataSpaceConnection class. - Modified getStudy method in DataSpaceConnection to take groupId as an argument in order to create a DataSpaceStudy object for a particular group. Changes in version 0.3.0 - Updated DataSpaceConnection class and connectDS constructor to be not study-specific. Changes in version 0.2.1 - Modified getUserEmail() to get email from netrc file. - Updated license to GPL-3. Changes in version 0.2.0 - Added getVariableInfo method to DataSpaceConnection class. - Changed variable names in getAvailableDatasets to lowercase. - Added treatmentArm field to DataSpaceConnection class. - Removed getAvailableDatasets method (now a private method). - Changed the default connection from staging (dataspace-staging.cavd.org) to production (dataspace.cavd.org). - Added an option to connect to the staging server. - Renamed write_netrc and check_netrc to writeNetrc and checkNetrc. Changes in version 0.1.0 - Initialized the package with connectDS() and other basic functions. - Added a test framework on tests to test the package. - Added .travis.yml to build and check the package automatically. (not used yet) - Added codecov.yml to track code coverage. (not used yet) - Added README.Rmd to introduce the package. - Added NEWS.md to track changes to the package. - Added _pkgdown.yml and /docs to build a package website. - Added a introductory vignette called Intro_to_DataSpaceR.Rmd.