Package 'ReLTER'

Title: An Interface for the eLTER Community
Description: ReLTER provides access to DEIMS-SDR (https://deims.org/), and allows interaction with data and software implemented by eLTER Research Infrastructure (RI) thus improving data sharing among European LTER projects. ReLTER uses the R language to access and interact with the DEIMS-SDR archive of information shared by the Long Term Ecological Research (LTER) network. This package grew within eLTER H2020 as a major project that will help advance the development of European Long-Term Ecosystem Research Infrastructures (eLTER RI - https://elter-ri.eu). The ReLTER package functions in particular allow to: - retrieve the information about entities (e.g. sites, datasets, and activities) shared by DEIMS-SDR (see e.g. get_site_info function); - interact with the [ODSEurope](maps.opendatascience.eu) starting with the dataset shared by [DEIMS-SDR](https://deims.org/) (see e.g. [get_site_ODS](https://docs.ropensci.org/ReLTER/reference/get_site_ODS.html) function); - use the eLTER site informations to download and crop geospatial data from other platforms (see e.g. get_site_ODS function); - improve the quality of the dataset (see e.g. get_id_worms). Functions currently implemented are derived from discussions of the needs among the eLTER users community. The ReLTER package will continue to follow the progress of eLTER-RI and evolve, adding new tools and improvements as required.
Authors: Alessandro Oggioni [aut, cre, fnd] , Micha Silver [aut, ctb] , Paolo Tagliolato [aut, ctb] , Luigi Ranghetti [aut, ctb] , Allison Horst [rev] (Allison reviewed the package (v. 1.0.0) for rOpenSci, see https://github.com/ropensci/software-review/issues/485), Will Bolton [rev] (Will reviewed the package (v. 1.0.0) for rOpenSci, see https://github.com/ropensci/software-review/issues/485), Mauro Lepore [edt] (Mauro was editor for rOpenSci, see https://github.com/ropensci/software-review/issues/485)
Maintainer: Alessandro Oggioni <[email protected]>
License: GPL (>= 3)
Version: 2.1.1
Built: 2024-07-13 02:23:58 UTC
Source: https://github.com/ropensci/ReLTER

Help Index


eLTER write Rdata data

Description

[Experimental] This function write a Rdata file from csv, tsv, txt, xls or xlsx dataset

Usage

elter_write_rdata(myfiles, delim)

Arguments

myfiles

A character. The list of the files to deposit in Zenodo. Please provide all files only with 'csv' extension.

delim

A character. Provide the character used to separate fields within a record. Only if the extension of the file(s) are 'csv', 'tsv', or 'txt'.

Value

This function returns a rds files.

Author(s)

Alessandro Oggioni, phD [email protected]

Examples

## Not run: 
## Not run:

elter_write_rdata(
  myfiles = c(
   "miscellaneus/file_show/data_mapping.csv",
   "miscellaneus/file_show/reference_TAXA.csv",
   "miscellaneus/file_show/reference_VARIABLES.csv"
  ),
  delim = ";"
)

## End(Not run)

## End (Not run)

Obtain the information about of an eLTER activity.

Description

[Stable] This function obtains the information about of an eLTER activity (e.g. https://deims.org/activity/8786fc6d-5d70-495c-b901-42f480182845) provided in DEIMS-SDR catalogue.

Usage

get_activity_info(activityid, show_map = FALSE)

Arguments

activityid

A character. It is the DEIMS ID of activity make from DEIMS-SDR website. DEIMS ID information here. The DEIMS.iD of activity is the URL for the activity page.

show_map

A boolean. If TRUE a Leaflet map with occurrences is shown. Default FALSE.

Value

The output of the function is a tibble with main features of the activities in a site, and a leaflet map plot.

The function output