{ "_id": "6a44d4156ff6f2357551c089", "Package": "mauricer", "Type": "Package", "Title": "Work with 'BEAST2' Packages", "Version": "2.5.5", "Authors@R": "c(\nperson(\"Richèl J.C.\", \"Bilderbeek\", email = \"rjcbilderbeek@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-1107-7049\")),\nperson(\"Olivier\", \"Roy\", role = \"ctb\"))", "Maintainer": "Richèl J.C. Bilderbeek ", "Description": "'BEAST2' () is a widely used\nBayesian phylogenetic tool, that uses DNA/RNA/protein data and\nmany model priors to create a posterior of jointly estimated\nphylogenies and parameters. 'BEAST2' is commonly accompanied by\n'BEAUti 2' (), which, among others,\nallows one to install 'BEAST2' package. This package allows to\nwork with 'BEAST2' packages from 'R'.", "License": "GPL-3", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "URL": "https://docs.ropensci.org/mauricer/ (website)\nhttps://github.com/ropensci/mauricer", "BugReports": "https://github.com/ropensci/mauricer/issues", "SystemRequirements": "BEAST2 (https://www.beast2.org/)", "Config/pak/sysreqs": "libglpk-dev make default-jdk libicu-dev libxml2-dev\nlibx11-dev zlib1g-dev", "Repository": "https://ropensci.r-universe.dev", "Date/Publication": "2025-12-17 07:40:49 UTC", "RemoteUrl": "https://github.com/ropensci/mauricer", "RemoteRef": "main", "RemoteSha": "e6dffca22b578977c1be138b4b389d64e872d36b", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-01 08:25:36 UTC", "User": "root" }, "Author": "Richèl J.C. Bilderbeek [aut, cre] (ORCID:\n),\nOlivier Roy [ctb]", "_user": "ropensci", "_type": "src", "_file": "mauricer_2.5.5.tar.gz", "_fileid": "https://r2.ropensci.org/d63893838c520c4af05d1e999c43c931a629e1691c484482cd6f6585a5b4ce7b", "_filesize": 166227, "_sha256": "d63893838c520c4af05d1e999c43c931a629e1691c484482cd6f6585a5b4ce7b", "_expires": "2026-10-09T08:47:17.000Z", "_created": "2026-07-01T08:25:36.000Z", "_published": "2026-07-01T08:47:17.423Z", "_jobs": [ { "job": 84488048600, "time": 145, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8004304235" }, { "job": 84488048574, "time": 137, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8004301425" }, { "job": 84488048548, "time": 83, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8004712536" }, { "job": 84488048543, "time": 73, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8004707968" }, { "job": 84487164112, "time": 179, "config": "pkgdown", "r": "4.6.0", "check": "OK", "artifact": "8004228236" }, { "job": 84487164038, "time": 185, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8004229975" }, { "job": 84488048560, "time": 166, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8004312086" }, { "job": 84488048555, "time": 76, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8004276086" }, { "job": 84488048530, "time": 74, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8004275282" }, { "job": 84488048547, "time": 85, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8004279639" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503648876", "_status": "success", "_upstream": "https://github.com/ropensci/mauricer", "_commit": { "id": "e6dffca22b578977c1be138b4b389d64e872d36b", "author": "richelbilderbeek ", "committer": "richelbilderbeek ", "message": "Fix Markdown\n", "time": 1765957249 }, "_maintainer": { "name": "Richèl J.C. Bilderbeek", "email": "rjcbilderbeek@gmail.com", "login": "richelbilderbeek", "orcid": "0000-0003-1107-7049", "description": "Thinks Open Science is a pleonasm.\nIn my free time, I teach programming and lead programming teams, both for/with kids and adults.", "uuid": 2098230 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "stringr", "role": "Imports" }, { "package": "beastier", "version": ">= 2.5", "role": "Imports" }, { "package": "beautier", "version": ">= 2.6.11", "role": "Suggests" }, { "package": "curl", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.1.0", "role": "Suggests" }, { "package": "tracerer", "role": "Suggests" } ], "_owner": "ropensci", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-35", "n": 2 }, { "week": "2025-44", "n": 1 }, { "week": "2025-51", "n": 2 } ], "_tags": [], "_stars": 3, "_contributors": [ { "user": "richelbilderbeek", "count": 19, "uuid": 2098230 }, { "user": "olivroy", "count": 3, "uuid": 52606734 } ], "_userbio": { "uuid": 1200269, "type": "organization", "name": "rOpenSci", "followers": 1106, "description": "Tools and R Packages for Open Science" }, "_downloads": { "count": 645, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mauricer" }, "_devurl": "https://github.com/ropensci/mauricer", "_pkgdown": "https://docs.ropensci.org/mauricer/", "_searchresults": 13, "_topics": [ "openjdk" ], "_metadata": { "ropensci_category": "scalereprod" }, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mauricer.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/ropensci/mauricer", "_realowner": "ropensci", "_cranurl": true, "_releases": [ { "version": "2.0.3", "date": "2019-11-15" }, { "version": "2.0.5", "date": "2019-12-02" }, { "version": "2.1", "date": "2020-08-10" }, { "version": "2.3", "date": "2020-10-31" }, { "version": "2.5.1", "date": "2021-09-08" }, { "version": "2.5.2", "date": "2022-08-12" }, { "version": "2.5.4", "date": "2024-06-11" } ], "_exports": [ "get_beast2_pkg_names", "get_mrc_path", "get_mrc_paths", "install_beast2_pkg", "is_beast2_ns_pkg_installed", "is_beast2_pkg_installed", "uninstall_beast2_pkg" ], "_help": [ { "page": "default_params_doc", "title": "This function does nothing. It is intended to inherit is parameters' documentation.", "topics": [ "default_params_doc" ] }, { "page": "get_beast2_pkg_names", "title": "Get all BEAST2 package names", "topics": [ "get_beast2_pkg_names" ] }, { "page": "get_mrc_path", "title": "Get the full path of a 'mauricer' file", "topics": [ "get_mrc_path" ] }, { "page": "get_mrc_paths", "title": "Get the full path of one or more 'mauricer' files", "topics": [ "get_mrc_paths" ] }, { "page": "install_beast2_pkg", "title": "Install a BEAST2 package", "topics": [ "install_beast2_pkg" ] }, { "page": "is_beast2_ns_pkg_installed", "title": "Is the BEAST2 NS package installed?", "topics": [ "is_beast2_ns_pkg_installed" ] }, { "page": "is_beast2_pkg_installed", "title": "Is a BEAST2 package installed?", "topics": [ "is_beast2_pkg_installed" ] }, { "page": "uninstall_beast2_pkg", "title": "Uninstall a BEAST2 package", "topics": [ "uninstall_beast2_pkg" ] } ], "_readme": "https://github.com/ropensci/mauricer/raw/main/README.md", "_rundeps": [ "ade4", "ape", "beastier", "beautier", "bit", "bit64", "cli", "clipr", "cpp11", "crayon", "digest", "fastmatch", "generics", "glue", "hms", "igraph", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "nlme", "phangorn", "pillar", "pixmap", "pkgconfig", "prettyunits", "progress", "purrr", "quadprog", "R6", "rappdirs", "Rcpp", "RcppArmadillo", "readr", "rJava", "rlang", "segmented", "seqinr", "sessioninfo", "sp", "stringi", "stringr", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "vroom", "withr", "xml2" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-25-jre-headless", "headers": "openjdk-25-jre-headless", "source": "openjdk", "version": "25.0.3+9-2~26.04.2", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_vignettes": [ { "source": "demo.Rmd", "filename": "demo.html", "title": "mauricer demo", "author": "Richèl J.C. Bilderbeek", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "List all BEAST2 packages", "Install the first non-installed BEAST2 package", "Uninstall the BEAST2 package" ], "created": "2018-09-11 08:46:28", "modified": "2021-05-22 10:28:03", "commits": 17 } ], "_score": 5.545307116465825, "_indexed": true, "_nocasepkg": "mauricer", "_universes": [ "ropensci", "richelbilderbeek" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.5.5", "date": "2026-07-01T08:28:51.000Z", "distro": "resolute", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "https://r2.ropensci.org/b76a65f87aa550dbf3b22283d028d5a586af800745fab8a0e0916efe6681032c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503648876" }, { "r": "4.6.1", "os": "linux", "version": "2.5.5", "date": "2026-07-01T08:28:44.000Z", "distro": "resolute", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "https://r2.ropensci.org/47293c5197f974dfcfc2c163d357c3996e2eeef6ac0533c405b67a837cd74b5a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503648876" }, { "r": "4.5.3", "os": "mac", "version": "2.5.5", "date": "2026-07-01T08:46:35.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "https://r2.ropensci.org/8be663c1f1c6ff34dd191654a76658e6f158ddbfd1e93870b6eba48fab466deb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503648876" }, { "r": "4.6.1", "os": "mac", "version": "2.5.5", "date": "2026-07-01T08:46:26.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "https://r2.ropensci.org/a8f44e56ca67fcae8ca697ac048d116a3c40c9e7825feb3b4275659c41a2bb6d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503648876" }, { "r": "4.6.0", "os": "wasm", "version": "2.5.5", "date": "2026-07-01T08:29:22.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "https://r2.ropensci.org/1ba843941f7f278cf33e74d67296e7b64d26f172dc903da73826cf217823308b", "status": "success", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503648876" }, { "r": "4.7.0", "os": "win", "version": "2.5.5", "date": "2026-07-01T08:27:35.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "https://r2.ropensci.org/e9bc1cbc419f9e997a70808eaa2483cc77e8073cae2aa5e28c8300cc715fcc85", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503648876" }, { "r": "4.5.3", "os": "win", "version": "2.5.5", "date": "2026-07-01T08:27:35.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "https://r2.ropensci.org/23688ba99e3380fe3902db304892f881761c86c3ed8027a2fa9c7405170883b8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503648876" }, { "r": "4.6.1", "os": "win", "version": "2.5.5", "date": "2026-07-01T08:27:44.000Z", "commit": "e6dffca22b578977c1be138b4b389d64e872d36b", "fileid": "https://r2.ropensci.org/8272899acc61fa5f888372ed6e5c20bdaf7f5e0b099f7de88df2af648d5d6502", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503648876" } ] }