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  "Title": "Model Comparison Using 'babette'",
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  "Description": "'BEAST2' (<https://www.beast2.org>) is a widely used\nBayesian phylogenetic tool, that uses DNA/RNA/protein data and\nmany model priors to create a posterior of jointly estimated\nphylogenies and parameters. 'mcbette' allows to do a Bayesian\nmodel comparison over some site and clock models, using\n'babette' (<https://github.com/ropensci/babette/>).",
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  "Encoding": "UTF-8",
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  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2025-10-29 13:11:24 UTC",
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    "can_run_mcbette",
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    "check_mcbette_state",
    "est_marg_lik",
    "est_marg_liks",
    "get_mcbette_state",
    "get_test_marg_liks",
    "interpret_bayes_factor",
    "interpret_marg_lik_estimates",
    "mcbette_report",
    "mcbette_self_test",
    "plot_marg_liks",
    "set_mcbette_state"
  ],
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      "page": "calc_weights",
      "title": "Calculate the weights for each marginal likelihood",
      "topics": [
        "calc_weights"
      ]
    },
    {
      "page": "can_run_mcbette",
      "title": "Can 'mcbette' run?",
      "topics": [
        "can_run_mcbette"
      ]
    },
    {
      "page": "check_beast2_ns_pkg",
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      "topics": [
        "check_beast2_ns_pkg"
      ]
    },
    {
      "page": "check_marg_liks",
      "title": "Check if the 'marg_liks' are of the same type as returned by est_marg_liks.",
      "topics": [
        "check_marg_liks"
      ]
    },
    {
      "page": "check_mcbette_state",
      "title": "Check if the 'mcbette_state' is valid.",
      "topics": [
        "check_mcbette_state"
      ]
    },
    {
      "page": "default_params_doc",
      "title": "Documentation of general function arguments. This function does nothing. It is intended to inherit function argument documentation.",
      "topics": [
        "default_params_doc"
      ]
    },
    {
      "page": "est_marg_lik",
      "title": "Estimate the marginal likelihood for an inference model.",
      "topics": [
        "est_marg_lik"
      ]
    },
    {
      "page": "est_marg_liks",
      "title": "Estimate the marginal likelihoods for one or more inference models",
      "topics": [
        "est_marg_liks"
      ]
    },
    {
      "page": "get_mcbette_state",
      "title": "Get the current state of mcbette",
      "topics": [
        "get_mcbette_state"
      ]
    },
    {
      "page": "get_test_marg_liks",
      "title": "Get testing 'marg_liks'",
      "topics": [
        "get_test_marg_liks"
      ]
    },
    {
      "page": "interpret_bayes_factor",
      "title": "Interpret a Bayes factor",
      "topics": [
        "interpret_bayes_factor"
      ]
    },
    {
      "page": "interpret_marg_lik_estimates",
      "title": "Interpret the marginal likelihood estimates",
      "topics": [
        "interpret_marg_lik_estimates"
      ]
    },
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      "page": "is_marg_liks",
      "title": "Determine if the 'marg_liks' is valid",
      "topics": [
        "is_marg_liks"
      ]
    },
    {
      "page": "mcbette_report",
      "title": "Create a mcbette report, to be used when reporting bugs",
      "topics": [
        "mcbette_report"
      ]
    },
    {
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      "title": "Performs a minimal mcbette run",
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        "mcbette_self_test"
      ]
    },
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      ]
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      ]
    }
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      "fileid": "https://r2.ropensci.org/6f81a0f18bb2670634603d3afbc9fcb018e7ede4696c526be3ea93bc2925aa44",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503629724"
    }
  ]
}