{
  "_id": "6ae4549c327abcdf86867d6a",
  "Package": "phylogram",
  "Type": "Package",
  "Title": "Dendrograms for Evolutionary Analysis",
  "Version": "2.1.0.9000",
  "Authors@R": "c(person(\"Shaun\", \"Wilkinson\", role = c(\"aut\", \"cre\"),\nemail = \"shaunpwilkinson@gmail.com\",\ncomment = c(ORCID = '0000-0002-7332-7931')),\nperson(\"Simon\", \"Davy\", role = \"aut\",\nemail = \"simon.davy@vuw.ac.nz\",\ncomment = c(ORCID = '0000-0003-3584-5356'))\n)",
  "Maintainer": "Shaun Wilkinson <shaunpwilkinson@gmail.com>",
  "Description": "Contains functions for developing phylogenetic trees as\ndeeply-nested lists (\"dendrogram\" objects). Enables\nbi-directional conversion between dendrogram and \"phylo\"\nobjects (see Paradis et al (2004)\n<doi:10.1093/bioinformatics/btg412>), and features several\ntools for command-line tree manipulation and import/export via\nNewick parenthetic text.",
  "License": "GPL-3",
  "URL": "https://docs.ropensci.org/phylogram,\nhttp://github.com/ropensci/phylogram",
  "BugReports": "http://github.com/ropensci/phylogram/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "6.0.1",
  "VignetteBuilder": "knitr",
  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2019-12-09 21:21:51 UTC",
  "RemoteUrl": "https://github.com/ropensci/phylogram",
  "RemoteRef": "HEAD",
  "RemoteSha": "9b7ce7672a048937d702d27205d5d212bf802305",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-30 07:47:20 UTC",
    "User": "root"
  },
  "Author": "Shaun Wilkinson [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7332-7931>),\nSimon Davy [aut] (ORCID: <https://orcid.org/0000-0003-3584-5356>)",
  "_user": "ropensci",
  "_type": "src",
  "_file": "phylogram_2.1.0.9000.tar.gz",
  "_fileid": "https://r2.ropensci.org/7301cb7f7a0834cbe8be25e37be365313e0085c20a80b163f92bb70fbb02fe14",
  "_filesize": 1921761,
  "_sha256": "7301cb7f7a0834cbe8be25e37be365313e0085c20a80b163f92bb70fbb02fe14",
  "_expires": "2027-02-07T08:26:02.000Z",
  "_created": "2026-10-30T07:47:20.000Z",
  "_published": "2026-10-30T08:26:04.426Z",
  "_upstream": "https://github.com/ropensci/phylogram",
  "_status": "success",
  "_maintainer": {
    "name": "Shaun Wilkinson",
    "email": "shaunpwilkinson@gmail.com",
    "login": "shaunpwilkinson",
    "description": "Managing Director at Wilderlab",
    "uuid": 10361217,
    "orcid": "0000-0002-7332-7931"
  },
  "_jobs": [
    {
      "job": 123952070958,
      "time": 116,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12961823846"
    },
    {
      "job": 123952071077,
      "time": 117,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12961932037"
    },
    {
      "job": 123952070863,
      "time": 124,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12963473021"
    },
    {
      "job": 123952070935,
      "time": 115,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12964240578"
    },
    {
      "job": 123951039174,
      "time": 181,
      "config": "pkgdown",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12962690160"
    },
    {
      "job": 123951039107,
      "time": 186,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12962565570"
    },
    {
      "job": 123952070889,
      "time": 89,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12961479015"
    },
    {
      "job": 123952071006,
      "time": 76,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12962177030"
    },
    {
      "job": 123952070937,
      "time": 100,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12962022701"
    },
    {
      "job": 123952070909,
      "time": 71,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12962525823"
    }
  ],
  "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/41021901409",
  "_commit": {
    "id": "9b7ce7672a048937d702d27205d5d212bf802305",
    "author": "rOpenSci Bot <myrmecocystus+ropenscibot@gmail.com>",
    "committer": "rOpenSci Bot <myrmecocystus+ropenscibot@gmail.com>",
    "message": "Add links to official docs site.\nFor more details: https://ropensci.org/technotes/2019/06/07/ropensci-docs/\n",
    "time": 1575926511
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "ape",
      "version": ">= 4.0",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "dendextend",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "ropensci",
  "_selfowned": true,
  "_usedby": 9,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "peer-reviewed"
  ],
  "_stars": 12,
  "_contributors": [
    {
      "user": "shaunpwilkinson",
      "count": 85,
      "uuid": 10361217
    }
  ],
  "_userbio": {
    "uuid": 1200269,
    "type": "organization",
    "name": "rOpenSci",
    "followers": 1166,
    "description": "Tools and R Packages for Open Science"
  },
  "_downloads": {
    "count": 766,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/phylogram"
  },
  "_mentions": 44,
  "_devurl": "https://github.com/ropensci/phylogram",
  "_pkgdown": "https://docs.ropensci.org/phylogram",
  "_searchresults": 263,
  "_metadata": {
    "review": {
      "id": 212,
      "status": "reviewed",
      "version": "2.0.1.9000",
      "organization": "rOpenSci Software Review",
      "url": "https://github.com/ropensci/software-review/issues/212"
    },
    "ropensci_category": "data-extraction"
  },
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/phylogram.html",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/ropensci/phylogram",
  "_realowner": "ropensci",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-06-12"
    },
    {
      "version": "1.0.1",
      "date": "2017-06-14"
    },
    {
      "version": "2.0.0",
      "date": "2018-04-10"
    },
    {
      "version": "2.0.1",
      "date": "2018-04-13"
    },
    {
      "version": "2.1.0",
      "date": "2018-06-25"
    }
  ],
  "_exports": [
    "as.cladogram",
    "as.dendrogram",
    "as.dendrogram.phylo",
    "as.phylo",
    "as.phylo.dendrogram",
    "ladder",
    "prune",
    "read.dendrogram",
    "remidpoint",
    "reposition",
    "write.dendrogram"
  ],
  "_help": [
    {
      "page": "as.cladogram",
      "title": "Apply unweighted branch lengths.",
      "topics": [
        "as.cladogram"
      ]
    },
    {
      "page": "as.dendrogram.phylo",
      "title": "Convert a \"phylo\" object to a dendrogram.",
      "topics": [
        "as.dendrogram.phylo"
      ]
    },
    {
      "page": "as.phylo.dendrogram",
      "title": "Convert a dendrogram to a \"phylo\" object.",
      "topics": [
        "as.phylo.dendrogram"
      ]
    },
    {
      "page": "ladder",
      "title": "Reorder tree branches in ladderized pattern.",
      "topics": [
        "ladder"
      ]
    },
    {
      "page": "phylogram",
      "title": "Dendrograms for evolutionary analysis.",
      "topics": [
        "phylogram-package",
        "phylogram"
      ]
    },
    {
      "page": "prune",
      "title": "Remove tree nodes by regular expression pattern matching.",
      "topics": [
        "prune"
      ]
    },
    {
      "page": "read.dendrogram",
      "title": "Read a dendrogram from parenthetic text.",
      "topics": [
        "read.dendrogram"
      ]
    },
    {
      "page": "remidpoint",
      "title": "Set dendrogram attributes for a nested list.",
      "topics": [
        "remidpoint"
      ]
    },
    {
      "page": "reposition",
      "title": "Reset dendrogram height attributes.",
      "topics": [
        "reposition"
      ]
    },
    {
      "page": "write.dendrogram",
      "title": "Write a dendrogram object to parenthetic text.",
      "topics": [
        "write.dendrogram"
      ]
    }
  ],
  "_readme": "https://github.com/ropensci/phylogram/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "digest",
    "lattice",
    "nlme",
    "Rcpp"
  ],
  "_vignettes": [
    {
      "source": "phylogram-vignette.Rmd",
      "filename": "phylogram-vignette.html",
      "title": "phylogram: an R package for phylogenetic analysis with dendrograms",
      "author": "Shaun P. Wilkinson ^1,2^ and Simon K. Davy ^1^",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Abstract",
        "Introduction",
        "The phylogram package",
        "Importing and exporting trees",
        "Example 1: Import and export a tree from a Newick string",
        "Converting tree objects",
        "Example 2: Convert a \"phylo\" object to a dendrogram",
        "Tree editing/manipulation",
        "Example 3: Building and manipulating dendrograms",
        "Tree visualization",
        "Summary",
        "Acknowledgements",
        "Author Contributions",
        "References"
      ],
      "created": "2017-01-18 03:18:28",
      "modified": "2018-06-26 05:06:12",
      "commits": 28
    }
  ],
  "_score": 8.629470763032389,
  "_indexed": true,
  "_nocasepkg": "phylogram",
  "_universes": [
    "ropensci",
    "shaunpwilkinson"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.1.0.9000",
      "date": "2026-10-30T07:49:15.000Z",
      "distro": "resolute",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/561a344114e0cd8bf89d6cc661b1c851841245a2ad7d84fa82e559a5943c2ee1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/41021901409"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.1.0.9000",
      "date": "2026-10-30T07:49:18.000Z",
      "distro": "resolute",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/4fa0db988a25a96f68565bae1772f5a6e7207be921e5d591dca54a7e34847e64",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/41021901409"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.1.0.9000",
      "date": "2026-10-30T08:24:54.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/6c9515ca6023b35db1cfa0155e770b3ca66763579c9d62c5a8d05bd6c35d39dd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/41021901409"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.1.0.9000",
      "date": "2026-10-30T08:25:15.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/99274ab5a03c7903160f3d65f0e988fa4e1c390a00713567d4cf8aaa39c3bb88",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/41021901409"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.1.0.9000",
      "date": "2026-10-30T07:49:07.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/45b49edb5968f1d5b84f21b7de89f1ed3f730287895312df97dcb8b9d919e01d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/41021901409"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.1.0.9000",
      "date": "2026-10-30T07:48:29.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/6b12524ba154d62aa3904ecd3d12fef6a852d737fcc3a59f13477d5da62c0317",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/41021901409"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.1.0.9000",
      "date": "2026-10-30T07:49:00.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/8dc2a0402631f1fe31a0c5764021a09e23bb8e69fd7908d2c912729bf5cc5a84",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/41021901409"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.1.0.9000",
      "date": "2026-10-30T07:48:28.000Z",
      "commit": "9b7ce7672a048937d702d27205d5d212bf802305",
      "fileid": "https://r2.ropensci.org/42aecb0a354196dbcd14a91e7dc26743ba1cae8adbc96a601bf28c3b46f60414",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/41021901409"
    }
  ]
}