{ "_id": "6a44d53d6ff6f2357551c2db", "Package": "spiro", "Title": "Manage Data from Cardiopulmonary Exercise Testing", "Version": "0.2.4.9000", "Authors@R": "c(\nperson(given = \"Simon\",\nfamily = \"Nolte\",\nrole = c(\"aut\", \"cre\"),\nemail = \"s.nolte@dshs-koeln.de\",\ncomment = c(ORCID = \"0000-0003-1643-1860\")),\nperson(given = \"Manuel\",\nfamily = \"Ramon\",\nrole = \"rev\",\ncomment = \"reviewed the package (v. 0.0.5) for rOpenSci, see \"),\nperson(given = \"James\",\nfamily = \"Hunter\",\nrole = \"rev\",\ncomment = \"reviewed the package (v. 0.0.5) for rOpenSci, see \")\n)", "Description": "Import, process, summarize and visualize raw data from\nmetabolic carts. See Robergs, Dwyer, and Astorino (2010)\n for more details on data\nprocessing.", "License": "MIT + file LICENSE", "URL": "https://github.com/ropensci/spiro,\nhttps://docs.ropensci.org/spiro/", "BugReports": "https://github.com/ropensci/spiro/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libxml2-dev", "Repository": "https://ropensci.r-universe.dev", "Date/Publication": "2026-06-30 09:51:04 UTC", "RemoteUrl": "https://github.com/ropensci/spiro", "RemoteRef": "main", "RemoteSha": "a1f9b3a31517658ab671fec44497258d625922da", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-01 08:27:32 UTC", "User": "root" }, "Author": "Simon Nolte [aut, cre] (ORCID: ),\nManuel Ramon [rev] (reviewed the package (v. 0.0.5) for rOpenSci, see\n),\nJames Hunter [rev] (reviewed the package (v. 0.0.5) for rOpenSci, see\n)", "Maintainer": "Simon Nolte ", "_user": "ropensci", "_type": "src", "_file": "spiro_0.2.4.9000.tar.gz", "_fileid": "https://r2.ropensci.org/9a1a8ceb0e7960a7630b0370502d58821ea37b43b579fcdc1e2c1f4d6a092e05", "_filesize": 6034422, "_sha256": "9a1a8ceb0e7960a7630b0370502d58821ea37b43b579fcdc1e2c1f4d6a092e05", "_expires": "2026-10-09T08:52:12.000Z", "_created": "2026-07-01T08:27:32.000Z", "_published": "2026-07-01T08:52:13.049Z", "_jobs": [ { "job": 84488405218, "time": 152, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8004350918" }, { "job": 84488405191, "time": 163, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8004355295" }, { "job": 84488405417, "time": 124, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8004828283" }, { "job": 84488405270, "time": 109, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8004820701" }, { "job": 84487615404, "time": 184, "config": "pkgdown", "r": "4.6.0", "check": "OK", "artifact": "8004266383" }, { "job": 84487615402, "time": 205, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8004274475" }, { "job": 84488405243, "time": 121, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8004338726" }, { "job": 84488405207, "time": 105, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8004330435" }, { "job": 84488405228, "time": 102, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8004330054" }, { "job": 84488405273, "time": 108, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8004331835" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503734670", "_status": "success", "_upstream": "https://github.com/ropensci/spiro", "_commit": { "id": "a1f9b3a31517658ab671fec44497258d625922da", "author": "Simon Nolte <81624911+smnnlt@users.noreply.github.com>", "committer": "Simon Nolte <81624911+smnnlt@users.noreply.github.com>", "message": "Increment version number\n", "time": 1782813064 }, "_maintainer": { "name": "Simon Nolte", "email": "s.nolte@dshs-koeln.de", "orcid": "0000-0003-1643-1860" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "ggplot2", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "readxl", "role": "Imports" }, { "package": "knitr", "role": "Imports" }, { "package": "cowplot", "role": "Imports" }, { "package": "digest", "role": "Imports" }, { "package": "signal", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "vdiffr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "ggborderline", "role": "Suggests" } ], "_owner": "ropensci", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-37", "n": 2 }, { "week": "2026-21", "n": 2 }, { "week": "2026-26", "n": 1 }, { "week": "2026-27", "n": 1 } ], "_tags": [ { "name": "v0.2.4", "date": "2026-06-26" } ], "_stars": 15, "_contributors": [ { "user": "smnnlt", "count": 400, "uuid": 81624911 }, { "user": "maelle", "count": 1, "uuid": 8360597 } ], "_userbio": { "uuid": 1200269, "type": "organization", "name": "rOpenSci", "followers": 1106, "description": "Tools and R Packages for Open Science" }, "_downloads": { "count": 332, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spiro" }, "_devurl": "https://github.com/ropensci/spiro", "_pkgdown": "https://docs.ropensci.org/spiro", "_searchresults": 57, "_metadata": { "review": { "id": 541, "status": "reviewed", "version": "0.0.5", "organization": "rOpenSci Software Review", "url": "https://github.com/ropensci/software-review/issues/541" }, "ropensci_category": "data-extraction" }, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/spiro.html", "LICENSE", "manual.pdf" ], "_homeurl": "https://github.com/ropensci/spiro", "_realowner": "ropensci", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2022-08-26" }, { "version": "0.1.2", "date": "2022-11-15" }, { "version": "0.2.0", "date": "2023-05-10" }, { "version": "0.2.1", "date": "2023-08-14" }, { "version": "0.2.3", "date": "2025-02-18" }, { "version": "0.2.4", "date": "2026-06-26" } ], "_exports": [ "add_bodymass", "add_hr", "add_protocol", "bw_filter", "get_anonid", "get_protocol", "pt_const", "pt_pre", "pt_steps", "pt_wu", "set_protocol", "set_protocol_manual", "spiro", "spiro_example", "spiro_import", "spiro_max", "spiro_plot", "spiro_raw", "spiro_smooth", "spiro_summary" ], "_help": [ { "page": "add_bodymass", "title": "Calculate additional variables related to body mass for cardiopulmonary exercise testing data", "topics": [ "add_bodymass" ] }, { "page": "add_hr", "title": "Import and add heart rate data to cardiopulmonary exercise testing data", "topics": [ "add_hr" ] }, { "page": "add_protocol", "title": "Add a test protocol to an exercise testing data set", "topics": [ "add_protocol" ] }, { "page": "bw_filter", "title": "Smooth data with a (zero-phase) Butterworth filter", "topics": [ "bw_filter" ] }, { "page": "get_anonid", "title": "Get the anonymization id from personal data", "topics": [ "get_anonid" ] }, { "page": "get_protocol", "title": "Guess a test protocol from a corresponding exercise testing data set", "topics": [ "get_protocol" ] }, { "page": "knit_print.spiro", "title": "Printing spiro data frames in a knitr context", "topics": [ "knit_print.spiro" ] }, { "page": "print.spiro", "title": "Printing spiro data frames", "topics": [ "print.spiro" ] }, { "page": "set_protocol", "title": "Setting an exercise testing profile", "topics": [ "pt_const", "pt_pre", "pt_steps", "pt_wu", "set_protocol" ] }, { "page": "set_protocol_manual", "title": "Manually setting a testing profile", "topics": [ "set_protocol_manual", "set_protocol_manual.data.frame", "set_protocol_manual.default" ] }, { "page": "spiro", "title": "Import and process raw data from metabolic carts/spiroergometric measures", "topics": [ "spiro" ] }, { "page": "spiro_example", "title": "Get path to spiro example", "topics": [ "spiro_example" ] }, { "page": "spiro_import", "title": "Import raw data from spiroergometric devices (deprecated)", "topics": [ "spiro_import" ] }, { "page": "spiro_max", "title": "Return maximum values from cardiopulmonary exercise tests", "topics": [ "spiro_max" ] }, { "page": "spiro_plot", "title": "Plot data from cardiopulmonary exercise data files", "topics": [ "spiro_plot" ] }, { "page": "spiro_raw", "title": "Get raw data from a metabolic cart file or an imported spiro object", "topics": [ "spiro_raw", "spiro_raw.default", "spiro_raw.spiro" ] }, { "page": "spiro_smooth", "title": "Apply a smoothing filter to data from cardiopulmonary exercise testing.", "topics": [ "spiro_smooth" ] }, { "page": "spiro_summary", "title": "Summarize data from cardiopulmonary exercise testing for each load step", "topics": [ "spiro_summary" ] } ], "_readme": "https://github.com/ropensci/spiro/raw/main/README.md", "_rundeps": [ "cellranger", "cli", "cowplot", "cpp11", "crayon", "digest", "evaluate", "farver", "ggplot2", "glue", "gtable", "highr", "hms", "isoband", "knitr", "labeling", "lifecycle", "magrittr", "MASS", "pillar", "pkgconfig", "prettyunits", "progress", "R6", "RColorBrewer", "readxl", "rematch", "rlang", "S7", "scales", "signal", "tibble", "utf8", "vctrs", "viridisLite", "withr", "xfun", "xml2", "yaml" ], "_vignettes": [ { "source": "import_processing.Rmd", "filename": "import_processing.html", "title": "Import & Processing", "engine": "knitr::rmarkdown", "headings": [ "Import and processing with spiro()", "Options for data processing", "Use breath-by-breath data!", "Supported metabolic carts", "Exercise protocols", "Protocol guessing", "Protocol setting", "Modify body mass", "Work with external heart rate data" ], "created": "2021-04-09 11:41:35", "modified": "2025-02-18 09:03:08", "commits": 30 }, { "source": "summarizing_plotting.Rmd", "filename": "summarizing_plotting.html", "title": "Summarizing & Plotting", "engine": "knitr::rmarkdown", "headings": [ "Load the data", "Stepwise summary with spiro_summary()", "Maximal parameter values with spiro_max()", "Plotting the data" ], "created": "2021-11-24 16:03:00", "modified": "2025-02-18 09:03:08", "commits": 10 } ], "_score": 6.534026106056135, "_indexed": true, "_nocasepkg": "spiro", "_universes": [ "ropensci" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.4.9000", "date": "2026-07-01T08:30:23.000Z", "distro": "resolute", "commit": "a1f9b3a31517658ab671fec44497258d625922da", "fileid": "https://r2.ropensci.org/c30728edc2dbab0023adfcd7f115cc377f8bbf795577f6affa302e263dd4af3c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503734670" }, { "r": "4.6.1", "os": "linux", "version": "0.2.4.9000", "date": "2026-07-01T08:30:30.000Z", "distro": "resolute", "commit": "a1f9b3a31517658ab671fec44497258d625922da", "fileid": "https://r2.ropensci.org/e58aa8d867f8a48ca20e5e78686416699446fd2b189cf78864ac989d9f8ce36a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503734670" }, { "r": "4.5.3", "os": "mac", "version": "0.2.4.9000", "date": "2026-07-01T08:51:04.000Z", "commit": "a1f9b3a31517658ab671fec44497258d625922da", "fileid": "https://r2.ropensci.org/398b56c7b0979f079e65f8909c39d81a187a6c5676452fd9738202f151499022", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503734670" }, { "r": "4.6.1", "os": "mac", "version": "0.2.4.9000", "date": "2026-07-01T08:50:47.000Z", "commit": "a1f9b3a31517658ab671fec44497258d625922da", "fileid": "https://r2.ropensci.org/dad69a59e7f2dbb8137a3b072a2495fbba3c352af92cc81f476170ad22c18257", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503734670" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.4.9000", "date": "2026-07-01T08:30:27.000Z", "commit": "a1f9b3a31517658ab671fec44497258d625922da", "fileid": "https://r2.ropensci.org/3b09dce1faaaeba2e10f22dec24cbf21b7dd1710b56697af781c915af3a6382b", "status": "success", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503734670" }, { "r": "4.7.0", "os": "win", "version": "0.2.4.9000", "date": "2026-07-01T08:29:21.000Z", "commit": "a1f9b3a31517658ab671fec44497258d625922da", "fileid": "https://r2.ropensci.org/853b1d94d6149ded4165cbbd2ab80fb62c128f5cb36ec52ee29d6b9b4aae391f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503734670" }, { "r": "4.5.3", "os": "win", "version": "0.2.4.9000", "date": "2026-07-01T08:29:20.000Z", "commit": "a1f9b3a31517658ab671fec44497258d625922da", "fileid": "https://r2.ropensci.org/dae737967c9f072c061b5eabbb5527972f09e7b34bc868d8fc7af0529e46d68a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503734670" }, { "r": "4.6.1", "os": "win", "version": "0.2.4.9000", "date": "2026-07-01T08:29:23.000Z", "commit": "a1f9b3a31517658ab671fec44497258d625922da", "fileid": "https://r2.ropensci.org/1daf252f7a1f902814836bf19d551716a72d4eb6b23e7fdb38aae556cf9a7ca5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503734670" } ] }