{ "_id": "6a44d40f6ff6f2357551c07f", "Package": "ssarp", "Type": "Package", "Title": "Species-/Speciation-Area Relationship Projector", "Description": "Create Species- and Speciation-Area Relationships using\noccurrence records or presence-absence matrices.", "Authors@R": "c(person(given = \"Kristen\", \nfamily = \"Martinet\",\nemail = \"kmartinet@outlook.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3905-9507\")),\nperson(given = \"Luke\",\nfamily = \"Harmon\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-4985-5750\")),\nperson(given = \"Cristian\",\nfamily = \"Román-Palacios\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0003-1696-4886\")),\nperson(given = \"Tom\",\nfamily = \"Matthews\",\nrole = \"rev\",\ncomment = \"Dr. Matthews reviewed the package for rOpenSci, see \"),\nperson(given = \"Joel\",\nfamily = \"Nitta\",\nrole = \"rev\",\ncomment = \"Dr. Nitta reviewed the package for rOpenSci, see \"))", "Maintainer": "Kristen Martinet ", "Version": "0.5.1", "URL": "https://github.com/ropensci/ssarp, https://docs.ropensci.org/ssarp", "BugReports": "https://github.com/ropensci/ssarp/issues", "LazyData": "true", "Encoding": "UTF-8", "License": "GPL (>=2)", "RoxygenNote": "7.3.2", "Roxygen": "list(markdown = TRUE)", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibicu-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev", "Repository": "https://ropensci.r-universe.dev", "Date/Publication": "2026-06-16 22:23:37 UTC", "RemoteUrl": "https://github.com/ropensci/ssarp", "RemoteRef": "main", "RemoteSha": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-01 08:24:45 UTC", "User": "root" }, "Author": "Kristen Martinet [aut, cre] (ORCID:\n),\nLuke Harmon [ctb] (ORCID: ),\nCristian Román-Palacios [ctb] (ORCID:\n),\nTom Matthews [rev] (Dr. Matthews reviewed the package for rOpenSci, see\n),\nJoel Nitta [rev] (Dr. Nitta reviewed the package for rOpenSci, see\n)", "_user": "ropensci", "_type": "src", "_file": "ssarp_0.5.1.tar.gz", "_fileid": "https://r2.ropensci.org/7b31c0c575ccb3724f3462a065e7c9cbde027b668558a0bdfa54cfac801d7ff2", "_filesize": 8376864, "_sha256": "7b31c0c575ccb3724f3462a065e7c9cbde027b668558a0bdfa54cfac801d7ff2", "_expires": "2026-10-09T08:47:10.000Z", "_created": "2026-07-01T08:24:45.000Z", "_published": "2026-07-01T08:47:11.098Z", "_jobs": [ { "job": 84487916480, "time": 182, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8004289365" }, { "job": 84487916467, "time": 176, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8004286789" }, { "job": 84487916513, "time": 118, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8004688328" }, { "job": 84487916500, "time": 169, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8004705620" }, { "job": 84486986539, "time": 186, "config": "pkgdown", "r": "4.6.0", "check": "OK", "artifact": "8004202505" }, { "job": 84486986562, "time": 221, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8004213450" }, { "job": 84487916415, "time": 160, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8004279830" }, { "job": 84487916482, "time": 116, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8004261475" }, { "job": 84487916526, "time": 111, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8004261370" }, { "job": 84487916492, "time": 122, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8004265324" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503618518", "_status": "success", "_upstream": "https://github.com/ropensci/ssarp", "_commit": { "id": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "author": "kmartinet ", "committer": "kmartinet ", "message": "New error in find_areas for tibble input\n", "time": 1781648617 }, "_maintainer": { "name": "Kristen Martinet", "email": "kmartinet@outlook.com", "login": "kmartinet", "description": "", "uuid": 33140392, "orcid": "0000-0002-3905-9507" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.3.0", "role": "Depends" }, { "package": "ape", "role": "Imports" }, { "package": "checkmate", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "Dict", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "mapdata", "role": "Imports" }, { "package": "maps", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "segmented", "role": "Imports" }, { "package": "sf", "role": "Imports" }, { "package": "stringi", "role": "Imports" }, { "package": "terra", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "knitr", "version": ">= 1.46", "role": "Suggests" }, { "package": "rgbif", "role": "Suggests" }, { "package": "BAMMtools", "role": "Suggests" }, { "package": "curl", "role": "Suggests" }, { "package": "httptest", "role": "Suggests" }, { "package": "spdep", "role": "Suggests" }, { "package": "epm", "role": "Suggests" } ], "_owner": "ropensci", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-27", "n": 9 }, { "week": "2025-29", "n": 15 }, { "week": "2025-31", "n": 2 }, { "week": "2025-32", "n": 2 }, { "week": "2025-36", "n": 6 }, { "week": "2025-37", "n": 6 }, { "week": "2025-38", "n": 1 }, { "week": "2025-39", "n": 6 }, { "week": "2025-40", "n": 2 }, { "week": "2025-41", "n": 2 }, { "week": "2025-42", "n": 2 }, { "week": "2026-23", "n": 1 }, { "week": "2026-25", "n": 1 } ], "_tags": [], "_stars": 6, "_contributors": [ { "user": "kmartinet", "count": 140, "uuid": 33140392 }, { "user": "maelle", "count": 1, "uuid": 8360597 } ], "_userbio": { "uuid": 1200269, "type": "organization", "name": "rOpenSci", "followers": 1106, "description": "Tools and R Packages for Open Science" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ssarp" }, "_devurl": "https://github.com/ropensci/ssarp", "_pkgdown": "https://docs.ropensci.org/ssarp", "_searchresults": 13, "_metadata": { "review": { "id": 685, "status": "reviewed", "version": "0.2.0", "organization": "rOpenSci Software Review", "url": "https://github.com/ropensci/software-review/issues/685" }, "ropensci_category": "scalereprod" }, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/ssarp.html", "manual.pdf" ], "_realowner": "ropensci", "_cranurl": false, "_exports": [ "create_sar", "create_SAR", "create_spar", "create_SpAR", "estimate_bamm", "estimate_BAMM", "estimate_dr", "estimate_DR", "estimate_ms", "estimate_MS", "find_areas", "find_land", "find_pam_areas", "get_island_areas", "get_presence_absence", "get_richness", "get_sources", "remove_continents" ], "_datasets": [ { "name": "island_areas", "title": "Island name data", "object": "island_areas", "class": [ "data.frame" ], "fields": [ "OBJECTID_1", "COUNT", "AREA", "MAX", "Name" ], "rows": 32472, "table": true, "tojson": true } ], "_help": [ { "page": "create_SAR", "title": "Create a species-area relationship (SAR) plot", "topics": [ "create_SAR", "create_sar" ] }, { "page": "create_SpAR", "title": "Create a speciation-area relationship plot (SpAR)", "topics": [ "create_SpAR", "create_spar" ] }, { "page": "estimate_BAMM", "title": "Get tip speciation rates from BAMM (Rabosky 2014) analysis", "topics": [ "estimate_BAMM", "estimate_bamm" ] }, { "page": "estimate_DR", "title": "Get speciation rates using the DR statistic (Jetz et al. 2012)", "topics": [ "estimate_DR", "estimate_dr" ] }, { "page": "estimate_MS", "title": "Get speciation rates following equation 4 in Magallón and Sanderson (2001)", "topics": [ "estimate_MS", "estimate_ms" ] }, { "page": "find_areas", "title": "Find areas of land masses.", "topics": [ "find_areas" ] }, { "page": "find_land", "title": "Find the name of the land on which the occurrence points were found", "topics": [ "find_land" ] }, { "page": "find_pam_areas", "title": "Find areas of islands using a presence-absence matrix (PAM)", "topics": [ "find_pam_areas" ] }, { "page": "get_island_areas", "title": "Access properly encoded island_area object", "topics": [ "get_island_areas" ] }, { "page": "get_presence_absence", "title": "Create a presence-absence dataframe for a given occurrence record dataframe", "topics": [ "get_presence_absence" ] }, { "page": "get_richness", "title": "Create a species richness dataframe for a given occurrence record dataframe", "topics": [ "get_richness" ] }, { "page": "get_sources", "title": "Gather sources from GBIF data for citation", "topics": [ "get_sources" ] }, { "page": "island_areas", "title": "Island name data", "topics": [ "island_areas" ] }, { "page": "plot.SAR", "title": "Plot a species-area relationship", "topics": [ "plot.SAR" ] }, { "page": "print.SAR", "title": "Print species-area relationship summary", "topics": [ "print.SAR" ] }, { "page": "remove_continents", "title": "Remove continents from area dataframe.", "topics": [ "remove_continents" ] } ], "_pkglogo": "https://github.com/ropensci/ssarp/raw/main/man/figures/logo.png", "_readme": "https://github.com/ropensci/ssarp/raw/main/README.md", "_rundeps": [ "ape", "askpass", "backports", "checkmate", "class", "classInt", "cli", "cpp11", "curl", "DBI", "Dict", "digest", "dplyr", "e1071", "generics", "glue", "httr", "jsonlite", "KernSmooth", "lattice", "lifecycle", "magrittr", "mapdata", "maps", "MASS", "mime", "nlme", "openssl", "pillar", "pkgconfig", "plyr", "proxy", "purrr", "R6", "Rcpp", "reshape2", "rlang", "s2", "segmented", "sf", "stringi", "stringr", "sys", "terra", "tibble", "tidyr", "tidyselect", "units", "utf8", "vctrs", "withr", "wk" ], "_vignettes": [ { "source": "Spatial_Autocorrelation.Rmd", "filename": "Spatial_Autocorrelation.html", "title": "Assessing Spatial Autocorrelation", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Testing for Spatial Autocorrelation using Moran's I", "References" ], "created": "2025-09-11 17:39:48", "modified": "2025-09-16 23:01:12", "commits": 2 }, { "source": "Create_SpAR.Rmd", "filename": "Create_SpAR.html", "title": "Construct a Speciation-Area Relationship with ssarp", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Generate Occurrence Data", "Estimate Speciation Rates", "Create Speciation-Area Relationship", "Estimating Speciation Rates with BAMM and DR", "Estimating Speciation Rates with BAMM", "Estimating Speciation Rates with DR", "Literature Cited" ], "created": "2025-01-22 21:37:20", "modified": "2026-06-01 21:51:46", "commits": 16 }, { "source": "Create_SAR.Rmd", "filename": "Create_SAR.html", "title": "Construct a Species-Area Relationship with ssarp", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Gathering Occurrence Data", "Finding Land Mass Names and Areas", "Create Species-Area Relationship", "Using a Presence-Absence Matrix to Infer a SAR", "Customizing Inputs to find_areas()", "Custom Area Dataframes", "Query a Shapefile for Areas" ], "created": "2025-01-22 21:37:20", "modified": "2026-06-01 21:51:46", "commits": 13 }, { "source": "Get_Data.Rmd", "filename": "Get_Data.html", "title": "Get Occurrence Records from GBIF", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Obtaining a Taxon Key", "Downloading Occurrence Records Using occ_download()", "Downloading Occurrence Records Using occ_search()", "Restricting Occurrence Records Using Geometry", "Curating GBIF Occurrence Records" ], "created": "2025-07-17 23:39:18", "modified": "2025-07-19 16:52:45", "commits": 5 } ], "_score": 5.307067950661298, "_indexed": true, "_nocasepkg": "ssarp", "_universes": [ "ropensci", "kmartinet" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.5.1", "date": "2026-07-01T08:27:50.000Z", "distro": "resolute", "commit": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "fileid": "https://r2.ropensci.org/bdd8b086db47e500a16d88bbe07e5eaeb810b5f4d74145496bae98d426b9c0db", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503618518" }, { "r": "4.6.1", "os": "linux", "version": "0.5.1", "date": "2026-07-01T08:27:42.000Z", "distro": "resolute", "commit": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "fileid": "https://r2.ropensci.org/aa232df631302ce845b4325430f4e47dbbc4b1ea7d8dd311f57ce6f291b65ecb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503618518" }, { "r": "4.5.3", "os": "mac", "version": "0.5.1", "date": "2026-07-01T08:45:12.000Z", "commit": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "fileid": "https://r2.ropensci.org/1eaef3e883816e8093bddb57cef0640b6146447717ceb0722cd9f23d3041b0bb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503618518" }, { "r": "4.6.1", "os": "mac", "version": "0.5.1", "date": "2026-07-01T08:45:41.000Z", "commit": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "fileid": "https://r2.ropensci.org/b2c0197addfe06f5804c7fb0b46a304fa6a4debe6cd5b68d98174955d6c352e4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503618518" }, { "r": "4.6.0", "os": "wasm", "version": "0.5.1", "date": "2026-07-01T08:27:59.000Z", "commit": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "fileid": "https://r2.ropensci.org/a51afa07b1f0f6b40c49281ba1354c81bcf2e2bd175c4d6ade6f5224ab5381c5", "status": "success", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503618518" }, { "r": "4.7.0", "os": "win", "version": "0.5.1", "date": "2026-07-01T08:26:22.000Z", "commit": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "fileid": "https://r2.ropensci.org/9b120ccc38aa8b296ebdd846b6ba6ccad4392c45075ec1bd62997ae1456d202c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503618518" }, { "r": "4.5.3", "os": "win", "version": "0.5.1", "date": "2026-07-01T08:26:26.000Z", "commit": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "fileid": "https://r2.ropensci.org/f7bd4343f2a36d2cf41bf59143e41ad94dacc19a9ed0f474856f482eac3c9914", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503618518" }, { "r": "4.6.1", "os": "win", "version": "0.5.1", "date": "2026-07-01T08:26:28.000Z", "commit": "b69ac1e0d46a108d74b4d8c17e23ce873f2c9dbf", "fileid": "https://r2.ropensci.org/fc5dcb01b12471880c110a09f7506d0c17f23e88c93d92e4b09ca50c5ab5c6e4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ropensci/actions/runs/28503618518" } ] }