{
  "_id": "6a4fb232c30f0868bbf1e6cf",
  "Package": "ssarp",
  "Type": "Package",
  "Title": "Species-/Speciation-Area Relationship Projector",
  "Description": "Create Species- and Speciation-Area Relationships using\noccurrence records or presence-absence matrices.",
  "Authors@R": "c(person(given = \"Kristen\", \nfamily = \"Martinet\",\nemail = \"kmartinet@outlook.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3905-9507\")),\nperson(given = \"Luke\",\nfamily = \"Harmon\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-4985-5750\")),\nperson(given = \"Cristian\",\nfamily = \"Román-Palacios\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0003-1696-4886\")),\nperson(given = \"Tom\",\nfamily = \"Matthews\",\nrole = \"rev\",\ncomment = \"Dr. Matthews reviewed the package for rOpenSci, see <https://github.com/ropensci/software-review/issues/685>\"),\nperson(given = \"Joel\",\nfamily = \"Nitta\",\nrole = \"rev\",\ncomment = \"Dr. Nitta reviewed the package for rOpenSci, see <https://github.com/ropensci/software-review/issues/685>\"))",
  "Maintainer": "Kristen Martinet <kmartinet@outlook.com>",
  "Version": "0.5.1",
  "URL": "https://github.com/ropensci/ssarp, https://docs.ropensci.org/ssarp",
  "BugReports": "https://github.com/ropensci/ssarp/issues",
  "LazyData": "true",
  "Encoding": "UTF-8",
  "License": "GPL (>=2)",
  "RoxygenNote": "7.3.2",
  "Roxygen": "list(markdown = TRUE)",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibicu-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev",
  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2026-07-09 13:59:51 UTC",
  "RemoteUrl": "https://github.com/ropensci/ssarp",
  "RemoteRef": "main",
  "RemoteSha": "b635fc9a933668ce822fceee8edbdbbee172ac52",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-09 14:21:38 UTC",
    "User": "root"
  },
  "Author": "Kristen Martinet [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3905-9507>),\nLuke Harmon [ctb] (ORCID: <https://orcid.org/0000-0002-4985-5750>),\nCristian Román-Palacios [ctb] (ORCID:\n<https://orcid.org/0000-0003-1696-4886>),\nTom Matthews [rev] (Dr. Matthews reviewed the package for rOpenSci, see\n<https://github.com/ropensci/software-review/issues/685>),\nJoel Nitta [rev] (Dr. Nitta reviewed the package for rOpenSci, see\n<https://github.com/ropensci/software-review/issues/685>)",
  "_user": "ropensci",
  "_type": "src",
  "_file": "ssarp_0.5.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/d55a79fbce19a4e3ee8806f24a2967a8471e850d4f5c2648dcb72062e8be1b54",
  "_filesize": 8376910,
  "_sha256": "d55a79fbce19a4e3ee8806f24a2967a8471e850d4f5c2648dcb72062e8be1b54",
  "_expires": "2026-10-17T14:37:36.000Z",
  "_created": "2026-07-09T14:21:38.000Z",
  "_published": "2026-07-09T14:37:38.690Z",
  "_jobs": [
    {
      "job": 86142376615,
      "time": 206,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8201244787"
    },
    {
      "job": 86142376478,
      "time": 179,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8201231456"
    },
    {
      "job": 86142376498,
      "time": 123,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8201608909"
    },
    {
      "job": 86142376414,
      "time": 150,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8201502128"
    },
    {
      "job": 86141424526,
      "time": 197,
      "config": "pkgdown",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8201119052"
    },
    {
      "job": 86141424480,
      "time": 232,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8201138111"
    },
    {
      "job": 86142376446,
      "time": 144,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8201213074"
    },
    {
      "job": 86142376562,
      "time": 107,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8201194612"
    },
    {
      "job": 86142376457,
      "time": 139,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8201211518"
    },
    {
      "job": 86142376476,
      "time": 112,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8201197459"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/29024775924",
  "_status": "success",
  "_upstream": "https://github.com/ropensci/ssarp",
  "_commit": {
    "id": "b635fc9a933668ce822fceee8edbdbbee172ac52",
    "author": "kmartinet <kmartinet@outlook.com>",
    "committer": "kmartinet <kmartinet@outlook.com>",
    "message": "Updated citation information\n",
    "time": 1783605591
  },
  "_maintainer": {
    "name": "Kristen Martinet",
    "email": "kmartinet@outlook.com",
    "login": "kmartinet",
    "description": "",
    "uuid": 33140392,
    "orcid": "0000-0002-3905-9507"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.3.0",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "Dict",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "mapdata",
      "role": "Imports"
    },
    {
      "package": "maps",
      "role": "Imports"
    },
    {
      "package": "reshape2",
      "role": "Imports"
    },
    {
      "package": "segmented",
      "role": "Imports"
    },
    {
      "package": "sf",
      "role": "Imports"
    },
    {
      "package": "stringi",
      "role": "Imports"
    },
    {
      "package": "terra",
      "role": "Imports"
    },
    {
      "package": "tidyr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "version": ">= 1.46",
      "role": "Suggests"
    },
    {
      "package": "rgbif",
      "role": "Suggests"
    },
    {
      "package": "BAMMtools",
      "role": "Suggests"
    },
    {
      "package": "curl",
      "role": "Suggests"
    },
    {
      "package": "httptest",
      "role": "Suggests"
    },
    {
      "package": "spdep",
      "role": "Suggests"
    },
    {
      "package": "epm",
      "role": "Suggests"
    }
  ],
  "_owner": "ropensci",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-29",
      "n": 15
    },
    {
      "week": "2025-31",
      "n": 2
    },
    {
      "week": "2025-32",
      "n": 2
    },
    {
      "week": "2025-36",
      "n": 6
    },
    {
      "week": "2025-37",
      "n": 6
    },
    {
      "week": "2025-38",
      "n": 1
    },
    {
      "week": "2025-39",
      "n": 6
    },
    {
      "week": "2025-40",
      "n": 2
    },
    {
      "week": "2025-41",
      "n": 2
    },
    {
      "week": "2025-42",
      "n": 2
    },
    {
      "week": "2026-23",
      "n": 1
    },
    {
      "week": "2026-25",
      "n": 1
    },
    {
      "week": "2026-28",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 6,
  "_contributors": [
    {
      "user": "kmartinet",
      "count": 141,
      "uuid": 33140392
    },
    {
      "user": "maelle",
      "count": 1,
      "uuid": 8360597
    }
  ],
  "_userbio": {
    "uuid": 1200269,
    "type": "organization",
    "name": "rOpenSci",
    "followers": 1115,
    "description": "Tools and R Packages for Open Science"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ssarp"
  },
  "_devurl": "https://github.com/ropensci/ssarp",
  "_pkgdown": "https://docs.ropensci.org/ssarp",
  "_searchresults": 13,
  "_metadata": {
    "review": {
      "id": 685,
      "status": "reviewed",
      "version": "0.2.0",
      "organization": "rOpenSci Software Review",
      "url": "https://github.com/ropensci/software-review/issues/685"
    },
    "ropensci_category": "scalereprod"
  },
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/ssarp.html",
    "manual.pdf"
  ],
  "_realowner": "ropensci",
  "_cranurl": false,
  "_exports": [
    "create_sar",
    "create_SAR",
    "create_spar",
    "create_SpAR",
    "estimate_bamm",
    "estimate_BAMM",
    "estimate_dr",
    "estimate_DR",
    "estimate_ms",
    "estimate_MS",
    "find_areas",
    "find_land",
    "find_pam_areas",
    "get_island_areas",
    "get_presence_absence",
    "get_richness",
    "get_sources",
    "remove_continents"
  ],
  "_datasets": [
    {
      "name": "island_areas",
      "title": "Island name data",
      "object": "island_areas",
      "class": [
        "data.frame"
      ],
      "fields": [
        "OBJECTID_1",
        "COUNT",
        "AREA",
        "MAX",
        "Name"
      ],
      "rows": 32472,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "create_SAR",
      "title": "Create a species-area relationship (SAR) plot",
      "topics": [
        "create_SAR",
        "create_sar"
      ]
    },
    {
      "page": "create_SpAR",
      "title": "Create a speciation-area relationship plot (SpAR)",
      "topics": [
        "create_SpAR",
        "create_spar"
      ]
    },
    {
      "page": "estimate_BAMM",
      "title": "Get tip speciation rates from BAMM (Rabosky 2014) analysis",
      "topics": [
        "estimate_BAMM",
        "estimate_bamm"
      ]
    },
    {
      "page": "estimate_DR",
      "title": "Get speciation rates using the DR statistic (Jetz et al. 2012)",
      "topics": [
        "estimate_DR",
        "estimate_dr"
      ]
    },
    {
      "page": "estimate_MS",
      "title": "Get speciation rates following equation 4 in Magallón and Sanderson (2001)",
      "topics": [
        "estimate_MS",
        "estimate_ms"
      ]
    },
    {
      "page": "find_areas",
      "title": "Find areas of land masses.",
      "topics": [
        "find_areas"
      ]
    },
    {
      "page": "find_land",
      "title": "Find the name of the land on which the occurrence points were found",
      "topics": [
        "find_land"
      ]
    },
    {
      "page": "find_pam_areas",
      "title": "Find areas of islands using a presence-absence matrix (PAM)",
      "topics": [
        "find_pam_areas"
      ]
    },
    {
      "page": "get_island_areas",
      "title": "Access properly encoded island_area object",
      "topics": [
        "get_island_areas"
      ]
    },
    {
      "page": "get_presence_absence",
      "title": "Create a presence-absence dataframe for a given occurrence record dataframe",
      "topics": [
        "get_presence_absence"
      ]
    },
    {
      "page": "get_richness",
      "title": "Create a species richness dataframe for a given occurrence record dataframe",
      "topics": [
        "get_richness"
      ]
    },
    {
      "page": "get_sources",
      "title": "Gather sources from GBIF data for citation",
      "topics": [
        "get_sources"
      ]
    },
    {
      "page": "island_areas",
      "title": "Island name data",
      "topics": [
        "island_areas"
      ]
    },
    {
      "page": "plot.SAR",
      "title": "Plot a species-area relationship",
      "topics": [
        "plot.SAR"
      ]
    },
    {
      "page": "print.SAR",
      "title": "Print species-area relationship summary",
      "topics": [
        "print.SAR"
      ]
    },
    {
      "page": "remove_continents",
      "title": "Remove continents from area dataframe.",
      "topics": [
        "remove_continents"
      ]
    }
  ],
  "_pkglogo": "https://github.com/ropensci/ssarp/raw/main/man/figures/logo.png",
  "_readme": "https://github.com/ropensci/ssarp/raw/main/README.md",
  "_rundeps": [
    "ape",
    "askpass",
    "backports",
    "checkmate",
    "class",
    "classInt",
    "cli",
    "cpp11",
    "curl",
    "DBI",
    "Dict",
    "digest",
    "dplyr",
    "e1071",
    "generics",
    "glue",
    "httr",
    "jsonlite",
    "KernSmooth",
    "lattice",
    "lifecycle",
    "magrittr",
    "mapdata",
    "maps",
    "MASS",
    "mime",
    "nlme",
    "openssl",
    "pillar",
    "pkgconfig",
    "plyr",
    "proxy",
    "purrr",
    "R6",
    "Rcpp",
    "reshape2",
    "rlang",
    "s2",
    "segmented",
    "sf",
    "stringi",
    "stringr",
    "sys",
    "terra",
    "tibble",
    "tidyr",
    "tidyselect",
    "units",
    "utf8",
    "vctrs",
    "withr",
    "wk"
  ],
  "_vignettes": [
    {
      "source": "Spatial_Autocorrelation.Rmd",
      "filename": "Spatial_Autocorrelation.html",
      "title": "Assessing Spatial Autocorrelation",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Testing for Spatial Autocorrelation using Moran's I",
        "References"
      ],
      "created": "2025-09-11 17:39:48",
      "modified": "2025-09-16 23:01:12",
      "commits": 2
    },
    {
      "source": "Create_SpAR.Rmd",
      "filename": "Create_SpAR.html",
      "title": "Construct a Speciation-Area Relationship with ssarp",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Generate Occurrence Data",
        "Estimate Speciation Rates",
        "Create Speciation-Area Relationship",
        "Estimating Speciation Rates with BAMM and DR",
        "Estimating Speciation Rates with BAMM",
        "Estimating Speciation Rates with DR",
        "Literature Cited"
      ],
      "created": "2025-01-22 21:37:20",
      "modified": "2026-06-01 21:51:46",
      "commits": 16
    },
    {
      "source": "Create_SAR.Rmd",
      "filename": "Create_SAR.html",
      "title": "Construct a Species-Area Relationship with ssarp",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Gathering Occurrence Data",
        "Finding Land Mass Names and Areas",
        "Create Species-Area Relationship",
        "Using a Presence-Absence Matrix to Infer a SAR",
        "Customizing Inputs to find_areas()",
        "Custom Area Dataframes",
        "Query a Shapefile for Areas"
      ],
      "created": "2025-01-22 21:37:20",
      "modified": "2026-06-01 21:51:46",
      "commits": 13
    },
    {
      "source": "Get_Data.Rmd",
      "filename": "Get_Data.html",
      "title": "Get Occurrence Records from GBIF",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Obtaining a Taxon Key",
        "Downloading Occurrence Records Using occ_download()",
        "Downloading Occurrence Records Using occ_search()",
        "Restricting Occurrence Records Using Geometry",
        "Curating GBIF Occurrence Records"
      ],
      "created": "2025-07-17 23:39:18",
      "modified": "2025-07-19 16:52:45",
      "commits": 5
    }
  ],
  "_score": 5.307067950661298,
  "_indexed": true,
  "_nocasepkg": "ssarp",
  "_universes": [
    "ropensci",
    "kmartinet"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.5.1",
      "date": "2026-07-09T14:24:43.000Z",
      "distro": "resolute",
      "commit": "b635fc9a933668ce822fceee8edbdbbee172ac52",
      "fileid": "https://r2.ropensci.org/576359ff01ea7280bdffbf263547f38c84dccec148c12eea167a6988bd936859",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/29024775924"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.5.1",
      "date": "2026-07-09T14:24:16.000Z",
      "distro": "resolute",
      "commit": "b635fc9a933668ce822fceee8edbdbbee172ac52",
      "fileid": "https://r2.ropensci.org/a18c787ce025752bbb3e93d9be46409c65250d582427217a996c09435c98880d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/29024775924"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.5.1",
      "date": "2026-07-09T14:36:30.000Z",
      "commit": "b635fc9a933668ce822fceee8edbdbbee172ac52",
      "fileid": "https://r2.ropensci.org/2a06d2ba282ac9218b2a726c5906bffca5db2288bd13c7be732242ba4cbc619f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/29024775924"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.5.1",
      "date": "2026-07-09T14:32:58.000Z",
      "commit": "b635fc9a933668ce822fceee8edbdbbee172ac52",
      "fileid": "https://r2.ropensci.org/173e6c1ac7d40eae130392e7a6dafe9533b172c69573b93ad3bd2161087499fe",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/29024775924"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.5.1",
      "date": "2026-07-09T14:24:18.000Z",
      "commit": "b635fc9a933668ce822fceee8edbdbbee172ac52",
      "fileid": "https://r2.ropensci.org/9f44310b4927609b9b2af3fc4e459bff178e7364f74b9f53c190a07eb084e345",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/29024775924"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.5.1",
      "date": "2026-07-09T14:22:57.000Z",
      "commit": "b635fc9a933668ce822fceee8edbdbbee172ac52",
      "fileid": "https://r2.ropensci.org/5f1aec32b057b580d5e168274c5142198aa364aed3516ac3c08da8715023e8e7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/29024775924"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.5.1",
      "date": "2026-07-09T14:23:30.000Z",
      "commit": "b635fc9a933668ce822fceee8edbdbbee172ac52",
      "fileid": "https://r2.ropensci.org/f71b555507f4be91bfe987c71a302e6629c8cad73071515bebdd92d8f22829de",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/29024775924"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.5.1",
      "date": "2026-07-09T14:23:01.000Z",
      "commit": "b635fc9a933668ce822fceee8edbdbbee172ac52",
      "fileid": "https://r2.ropensci.org/f161be3a7cc6b5c8504377a4f2a6ed8f88486f78591d9a7a18438cc1354e38c2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/29024775924"
    }
  ]
}