{
  "_id": "6a1f31aab401979e73427ce8",
  "Package": "treebase",
  "Type": "Package",
  "Title": "Discovery, Access and Manipulation of 'TreeBASE' Phylogenies",
  "Version": "0.1.5",
  "Authors@R": "c(person(\"Carl\", \"Boettiger\", role = c(\"aut\", \"cre\"),\nemail = \"cboettig@gmail.com\"),\nperson(\"Duncan\", \"Temple Lang\", role = \"aut\"))",
  "Description": "Interface to the API for 'TreeBASE' <http://treebase.org>\nfrom 'R.' 'TreeBASE' is a repository of user-submitted\nphylogenetic trees (of species, population, or genes) and the\ndata used to create them.",
  "License": "CC0",
  "Encoding": "UTF-8",
  "URL": "https://docs.ropensci.org/treebase/,\nhttps://github.com/ropensci/treebase",
  "BugReports": "https://github.com/ropensci/treebase/issues",
  "RoxygenNote": "7.3.1",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "make libxml2-dev libssl-dev",
  "Repository": "https://ropensci.r-universe.dev",
  "Date/Publication": "2024-02-16 05:35:56 UTC",
  "RemoteUrl": "https://github.com/ropensci/treebase",
  "RemoteRef": "master",
  "RemoteSha": "5954c072bb9b2168a3d6554316a5d7f28d087584",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 08:17:36 UTC",
    "User": "root"
  },
  "Author": "Carl Boettiger [aut, cre],\nDuncan Temple Lang [aut]",
  "Maintainer": "Carl Boettiger <cboettig@gmail.com>",
  "MD5sum": "d11f5972211e616ff7dbbd07ab4a3a7d",
  "_user": "ropensci",
  "_type": "src",
  "_file": "treebase_0.1.5.tar.gz",
  "_fileid": "b026a0e8da01e76ad6e9e7d185352c697baf33ec9546c5b8d78b71b3c81747ed",
  "_filesize": 4317365,
  "_sha256": "b026a0e8da01e76ad6e9e7d185352c697baf33ec9546c5b8d78b71b3c81747ed",
  "_created": "2026-05-15T08:17:36.000Z",
  "_published": "2026-06-02T19:40:26.470Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79156715320,
      "time": 142,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7012949810"
    },
    {
      "job": 79156714941,
      "time": 137,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7012948732"
    },
    {
      "job": 79156714955,
      "time": 86,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7012937445"
    },
    {
      "job": 79156715284,
      "time": 128,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7012946535"
    },
    {
      "job": 79156714196,
      "time": 153,
      "config": "pkgdown",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7012912061"
    },
    {
      "job": 79156714402,
      "time": 181,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7012918111"
    },
    {
      "job": 79156714483,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7368007605"
    },
    {
      "job": 79156715242,
      "time": 87,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7012937630"
    },
    {
      "job": 79156715240,
      "time": 75,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7012935164"
    },
    {
      "job": 79156715259,
      "time": 79,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7012936148"
    }
  ],
  "_buildurl": "https://github.com/r-universe/ropensci/actions/runs/25907625891",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/ropensci/treebase",
  "_commit": {
    "id": "5954c072bb9b2168a3d6554316a5d7f28d087584",
    "author": "Carl <cboettig@gmail.com>",
    "committer": "Carl <cboettig@gmail.com>",
    "message": "fix urls\n",
    "time": 1708061756
  },
  "_maintainer": {
    "name": "Carl Boettiger",
    "email": "cboettig@gmail.com",
    "login": "cboettig",
    "mastodon": "@cboettig@ecoevo.social",
    "bluesky": "@cboettig.bsky.social",
    "uuid": 222586
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.15",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Depends"
    },
    {
      "package": "XML",
      "role": "Imports"
    },
    {
      "package": "RCurl",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "ropensci",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_stars": 10,
  "_contributors": [
    {
      "user": "cboettig",
      "count": 214,
      "uuid": 222586
    },
    {
      "user": "sckott",
      "count": 12,
      "uuid": 577668
    },
    {
      "user": "duncantl",
      "count": 1,
      "uuid": 622617
    }
  ],
  "_userbio": {
    "uuid": 1200269,
    "type": "organization",
    "name": "rOpenSci",
    "description": "Tools and R Packages for Open Science"
  },
  "_downloads": {
    "count": 240,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/treebase"
  },
  "_mentions": 3,
  "_devurl": "https://github.com/ropensci/treebase",
  "_pkgdown": "https://docs.ropensci.org/treebase/",
  "_searchresults": 50,
  "_metadata": {
    "ropensci_category": "data-access"
  },
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/treebase.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/ropensci/treebase",
  "_realowner": "ropensci",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0-3",
      "date": "2011-10-25"
    },
    {
      "version": "0.0-4",
      "date": "2011-11-15"
    },
    {
      "version": "0.0-5",
      "date": "2012-03-03"
    },
    {
      "version": "0.0-6",
      "date": "2012-06-27"
    },
    {
      "version": "0.0-7.1",
      "date": "2014-02-21"
    },
    {
      "version": "0.1.0",
      "date": "2015-06-15"
    },
    {
      "version": "0.1.1",
      "date": "2015-06-16"
    },
    {
      "version": "0.1.2",
      "date": "2015-10-14"
    },
    {
      "version": "0.1.3",
      "date": "2016-09-05"
    },
    {
      "version": "0.1.4",
      "date": "2017-02-06"
    },
    {
      "version": "0.1.5",
      "date": "2024-02-16"
    }
  ],
  "_exports": [
    "cache_treebase",
    "download_metadata",
    "drop_nontrees",
    "dryad_metadata",
    "have_branchlength",
    "metadata",
    "search_treebase"
  ],
  "_datasets": [
    {
      "name": "metadata",
      "title": "metadata.rda",
      "object": "metadata",
      "file": "metadata.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "treebase",
      "title": "treebase.rda",
      "object": "treebase",
      "file": "treebase.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "cache_treebase",
      "title": "A function to cache the phylogenies in treebase locally",
      "topics": [
        "cache_treebase"
      ]
    },
    {
      "page": "download_metadata",
      "title": "Download the metadata on treebase using the OAI-MPH interface",
      "topics": [
        "download_metadata"
      ]
    },
    {
      "page": "drop_nontrees",
      "title": "drop errors from the search",
      "topics": [
        "drop_nontrees"
      ]
    },
    {
      "page": "dryad_metadata",
      "title": "Search the dryad metadata archive",
      "topics": [
        "dryad_metadata"
      ]
    },
    {
      "page": "have_branchlength",
      "title": "Simple function to identify which trees have branch lengths",
      "topics": [
        "have_branchlength"
      ]
    },
    {
      "page": "metadata",
      "title": "metadata.rda",
      "topics": [
        "metadata"
      ]
    },
    {
      "page": "search_treebase",
      "title": "A function to pull in the phyologeny/phylogenies matching a search query",
      "topics": [
        "search_treebase"
      ]
    },
    {
      "page": "treebase",
      "title": "treebase.rda",
      "topics": [
        "treebase"
      ]
    }
  ],
  "_readme": "https://github.com/ropensci/treebase/raw/master/README.md",
  "_rundeps": [
    "ape",
    "askpass",
    "bitops",
    "curl",
    "digest",
    "httr",
    "jsonlite",
    "lattice",
    "mime",
    "nlme",
    "openssl",
    "R6",
    "Rcpp",
    "RCurl",
    "sys",
    "XML"
  ],
  "_vignettes": [
    {
      "source": "vignette.Rmd",
      "filename": "vignette.html",
      "title": "Treebase Tutorial",
      "author": "Carl Boettiger",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Basic tree and metadata queries",
        "Replicating results",
        "Meta-Analysis"
      ],
      "created": "2014-02-20 19:23:44",
      "modified": "2024-02-16 05:35:56",
      "commits": 7
    }
  ],
  "_score": 6.653212513775344,
  "_indexed": true,
  "_nocasepkg": "treebase",
  "_universes": [
    "ropensci",
    "cboettig"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.5",
      "date": "2026-05-15T08:19:49.000Z",
      "distro": "noble",
      "commit": "5954c072bb9b2168a3d6554316a5d7f28d087584",
      "fileid": "4f25a819b025fe5f35b2c07be4803b174a80f348854d09e0a6173a1459f8bd29",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/25907625891"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.5",
      "date": "2026-05-15T08:19:46.000Z",
      "distro": "noble",
      "commit": "5954c072bb9b2168a3d6554316a5d7f28d087584",
      "fileid": "30bc76820f58a1cc16ce7d2605bb057da44b74264f515985101b9730e93f9512",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/25907625891"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.5",
      "date": "2026-05-15T08:19:04.000Z",
      "commit": "5954c072bb9b2168a3d6554316a5d7f28d087584",
      "fileid": "55200756dcb0c67aaea10dde6984673113bb96a1b08e4d3d6918b0a3c8827308",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/25907625891"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.5",
      "date": "2026-05-15T08:19:32.000Z",
      "commit": "5954c072bb9b2168a3d6554316a5d7f28d087584",
      "fileid": "6c1ec5fb5da6a00dfc994f5804544e1ce336624cfa5c44b66d12b0e012501193",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/25907625891"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.5",
      "date": "2026-05-15T08:18:50.000Z",
      "commit": "5954c072bb9b2168a3d6554316a5d7f28d087584",
      "fileid": "696decf5c2930994f9d0f9fd417cc5b6ebfab3b612bb28e7fdf187d6e78654ed",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/25907625891"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.5",
      "date": "2026-05-15T08:18:43.000Z",
      "commit": "5954c072bb9b2168a3d6554316a5d7f28d087584",
      "fileid": "94227f9dda3c21d3f13d56c46466183ea4e208ced0276165da62f604c40af8de",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/25907625891"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.5",
      "date": "2026-05-15T08:18:47.000Z",
      "commit": "5954c072bb9b2168a3d6554316a5d7f28d087584",
      "fileid": "8e78c43e20faa120266ce732ca97b9da00405ae818b78fc56c6f18a1bfe0e524",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/25907625891"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.5",
      "date": "2026-06-02T19:39:55.000Z",
      "commit": "5954c072bb9b2168a3d6554316a5d7f28d087584",
      "fileid": "77ce34554ad06930536b1756b087759e3f42cbe399701b9e8bf5ba5604e8f38e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ropensci/actions/runs/25907625891"
    }
  ]
}