NEWS
babette 2.3.4 (2024-06-25)
NEW FEATURES
MINOR IMPROVEMENTS
- Deprecate 'upgrade_babette', as this is against CRAN guidelines
- All functions have their return value documented
- Documentation links to other packages' documentation
BUG FIXES
- Removed unused dependencies, and testthat dependency outside tests.
- Import rlang for checking conditions.
DEPRECATED AND DEFUNCT
babette 2.3.3 (2023-09-27)
NEW FEATURES
MINOR IMPROVEMENTS
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.3.2 (2022-08-12)
NEW FEATURES
MINOR IMPROVEMENTS
- Did
usethis::use_package_doc()
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.3.1 (2022-06-21)
NEW FEATURES
MINOR IMPROVEMENTS
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.3 (2021-09-27)
NEW FEATURES
- Use GitHub Actions as a continuous integration service
MINOR IMPROVEMENTS
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.2 (2020-11-06)
NEW FEATURES
MINOR IMPROVEMENTS
- Do not run example code of internal function 'prepare_file_creation'
on CRAN flavor
r-oldrel-macos-x86_64
BUG FIXES
- Can run BEAST2 and BEAST2 packages when these are installed at
a custom location
DEPRECATED AND DEFUNCT
babette 2.1.4 (2020-08-11)
NEW FEATURES
MINOR IMPROVEMENTS
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.1.3
NEW FEATURES
MINOR IMPROVEMENTS
- No testthat usage in documentation examples
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.1.2 (2020-02-01)
NEW FEATURES
MINOR IMPROVEMENTS
- Use https of BEAST2 website
- Building the package does not create temporary files in
~/.cache, fix #85
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.1.1 (2020-01-11)
NEW FEATURES
MINOR IMPROVEMENTS
- Process feedback CRAN (Issue 81)
- Renamed internal function names to be more descriptive
BUG FIXES
DEPRECATED AND DEFUNCT
- Remove arguments that are deprecated, as there is no CRAN
version yet
babette 2.1
NEW FEATURES
- Follow the
beastier v2.3 new interface, in which the log filenames
are part of the MCMC (as created by create_mcmc)
MINOR IMPROVEMENTS
BUG FIXES
DEPRECATED AND DEFUNCT
- In
create_beast2_options,
output_log_filename and output_trees_filenames are removed
as arguments. These values are set by the BEAST2 XML
babette 2.0.3
NEW FEATURES
- babette can run when the BEAST2 options request temporary files
in sub-sub-subfolders
MINOR IMPROVEMENTS
- Builds on Travis CI's Bionic distribution
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.0.2
NEW FEATURES
MINOR IMPROVEMENTS
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.0.1
NEW FEATURES
MINOR IMPROVEMENTS
- Travis CI uses
phangorns binary R package
BUG FIXES
DEPRECATED AND DEFUNCT
babette 2.0
NEW FEATURES
- Transferred GitHub repository ownership to
ropensci
- CRAN and rOpenSci release candidate
MINOR IMPROVEMENTS
BUG FIXES
DEPRECATED AND DEFUNCT
babette 1.2.5
NEW FEATURES
MINOR IMPROVEMENTS
- BEAST2 package management using
mauricer works under Windows as well
babette indicates that BEAST2.exe cannot be run under Windows- Simplified interface for parameters:
# Old
distr <- create_distr_poisson(id = 1, lambda = create_lambda_param(value = 1.2))
# Added
distr <- create_distr_poisson(id = 1, lambda = 1.2)
BUG FIXES
DEPRECATED AND DEFUNCT
- Cannot use hyper parameters
# Deprecated: create a hyper parameter
create_lambda_param(value = 1.2, estimate = TRUE)
babette 1.2.4
NEW FEATURES
MINOR IMPROVEMENTS
BUG FIXES
DEPRECATED AND DEFUNCT
babette 1.2.3
NEW FEATURES
MINOR IMPROVEMENTS
- Renamed
run to bbt_run to reduce conflicts with other packages
BUG FIXES
DEPRECATED AND DEFUNCT
babette 1.2.2
NEW FEATURES
MINOR IMPROVEMENTS
BUG FIXES
DEPRECATED AND DEFUNCT