Changes in version 0.7.1 - adding new maintainer info #47 - Updating CI Rcmd checks with package usethis Changes in version 0.7.0 (2021-05-11) MINOR IMPROVEMENTS - vignettes fix (#45) Changes in version 0.6.0 (2020-06-12) MINOR IMPROVEMENTS - the APG dataset in taxize package was updated in taxize v0.9.97 - changes made to comply with the changes in the APG dataset structure (#41) Changes in version 0.5.0 (2019-07-27) MINOR IMPROVEMENTS - now using package conditionz in the phylomatic_names() function for handling messages from the taxize package about the user not having an API key set (#36) (#40) BUG FIXES - require newest phylocomr version that has fixes for various mis-behavior (#38) (#39) Changes in version 0.4.0 (2018-12-05) NEW FEATURES - in the phylomatic_local() function now using phylocomr::ph_phylomatic instead of shelling out to Phylocom via system. A number of parameters are gone due to the change internally (#30) (#35) - in the rbladj() function now using phylocomr::ph_bladj instead of shelling out to Phylocom via system (#30) (#35) - added a package vignette (#31) (#34) thanks @fozy81 - added new dataset of four phylogenetic trees that can be used in phylomatic_local(), see ?phylomatic_trees MINOR IMPROVEMENTS - added docs to phylomatic_names() and the README on using NCBI Entrez API keys Changes in version 0.3.0 (2018-06-19) NEW FEATURES - gains new function bladj (#18) - replaced httr with crul for http requests (#25) MINOR IMPROVEMENTS - fix links to readme images (#29) (#26) - verbose param in phylomatic() function changed to mssgs Changes in version 0.2.0 (2016-04-14) NEW FEATURES - Added function phylomatic_local() to use Phylomatic locally. Phylomatic is a set of Awk scripts, which have to be downloaded by the user. After downloading, this function uses the local version of Phylomatic (Same as that that runs as a web service). This is advantageous especially when dealing with large queries. (#13) MINOR IMPROVEMENTS - Fixed clean parameter in phylomatic() and phylomatic_local() to expect a logical (TRUE or FALSE) instead of a "true" or "false". (#15) - A related change to that above, changed reading newick strings to use phytools::read.newick() instead of ape::read.tree(), which handles the result of clean=FALSE in phylomatic() and phylomatic_local() (#16) - Documented that in the storedtree parameter of phylomatic() and phylomatic_local() the tree from Zanne et al. is also available by using storedtree="zanne2014" (#19) Changes in version 0.1.0 (2015-11-12) NEW FEATURES - Released to CRAN.