field_types_advanced() function. Allows just a subset of the columns in the source df to be named explicitly in the specification, with the remaining columns set to the .default_field_type parameter. (#16)New ft_strata() field type, which when specified, produces a report where the aggregated data and individual data fields plots are stratified by the ft_strata() column's distinct values
Column-specific strings for missing values can now be set in the field_types() specification (#13)
Categorical data fields now show a heatmap plot as well as the individual time series plots when aggregate_by_each_category option is set to TRUE
Categorical data fields now retain special characters in labels when aggregate_by_each_category option is set to TRUE
Print method of daiquiri_object now displays the location the report was saved to
When a data field contains all missing values, this now shows correctly in the various tabs (#12)
When running package from within rmarkdown/quarto (rmd/qmd) files, the parent file can now contain a chunk labelled setup without causing an error. (#7)
Hex logo now appears on reports, adding dependency to xfun
Validation warnings now match column names correctly when field_types are specified in a different order to the supplied data frame columns
Passing in a data frame containing integer columns no longer causes an aggregation error (#9)
Calling functions with package prefix no longer causes an error (#10)
Fixed (some) errors about duplicate chunk labels when running package from within rmarkdown/quarto (rmd/qmd) files (bug introduced in previous release 1.0.2). This now allows chunks in the parent file to be unlabelled but unfortunately still errors when there is a chunk labelled setup. (#7)
tempdir() instead of to the directory of the report_htmldoc.Rmd file (the default behaviour of rmarkdown::render()). This fixes errors caused when the library location is read-only.First release to CRAN
aes_string() in ggplot2This release incorporates changes requested for acceptance into https://ropensci.org/. There are many breaking changes as objects have been renamed for better consistency and style.
daiquiri_report() replaces create_report() and some parameters have been renamed.
field_types() replaces fieldtypes().
prepare_data(), aggregate_data(), and report_data() parameters have been renamed.
initialise_log() replaces log_initialise().
close_log() replaces log_close().
template_field_types() replaces fieldtypes_template()
Fixed error when user passes in a data.table (to daiquiri_report() or prepare_data()) that contains non-character columns.
daiquiri_report (formerly create_report()) and report_data() accept a new parameter report_title.
report_data() now accepts ... parameter to be passed through to rmarkdown::render().
close_log() now returns the path to the closed log file (if any).
example_prescriptions.csv replaces example_dataset.csv as the example dataset supplied with the package.
This release moves the reading of csv files out into a separate function in order to make it more configurable and to handle the parsing of all fields as character data for the user.
create_report() now only accepts a dataframe as the first parameter. The textfile_contains_columnnames parameter has been removed.
load_data() has been replaced with read_data() and prepare_data().
log_initialise() function: dirpath parameter renamed to log_directory.
New function read_data() reads data from a delimited file, with all columns read in as character type.
New function prepare_data() validates a dataframe against a fieldtypes specification, and prepares it for aggregation.
create_report() accepts a new parameter dataset_shortdesc for the user to specify a dataset description to appear on the report.
export_aggregated_data() function accepts new save_fileprefix parameter.
New function fieldtypes_template() generates template code for creating a fieldtypes specification based on an existing dataframe, and outputs it to the console.
Fixed ALL_FIELDS_COMBINED calculated field rowsumming NAs incorrectly.
Fixed plots failing when all values are missing.
Fixed log_message() trying to write to different log file when called from Rmd folder (and relative path used).
Made '[DUPLICATES]' and '[ALL_FIELDS_COMBINED]' reserved names for data fields.
Allow column names in supplied dataframe to contain special characters.
Reduced real estate at top of report.
Removed datatype column and fixed validation warnings total from Source data tab in report.
Updated example data.
Added further validation checks for user-supplied params.
Added CITATION file.
Beta release. Complete list of functions exported:
aggregate_data()create_report() accepts either a dataframe or csv filename as the first parameter. This may change in future.export_aggregated_data()field_types()ft_categorical()ft_datetime()ft_freetext()ft_ignore()ft_numeric()ft_simple()ft_timepoint()ft_uniqueidentifier()load_data() accepts either a dataframe or csv filename as the first parameter. This may change in future.log_close()log_initialise()report_data()