Changes in version 0.3 (2025-01-17)                   

User-facing changes

  - Changed function names to snakemake (i.e., jointModel() to
    joint_model())
  - Changed function arguments to snakemake (i.e., n.chain to n_chain)
  - Changed input data names to snakemake (i.e., qPCR.N to pcr_n)
  - Changed MCMC sampling arguments so the n_iter includes all MCMC
    iterations, including the number of warm-up iterations specified in
    n_warmup. Changed default values accordingly.

Non-user facing changes

  - Collapsed Stan files with more conditional statements to accommodate
    more model variations within one file
  - Added Stan helper functions
  - Moved joint_model and traditional_model helper functions to new
    files
  - Linted package to match default lintr style
  - Updated compilation flags to allow installation from source on
    Windows RStudio

                  Changes in version 0.2 (2024-10-08)                   

  - Package source code now hosted at
    https://github.com/ropensci/eDNAjoint
  - Improved programming (i.e., reduced cyclomatic complexity, spacing,
    etc.)
  - Added functionality to accommodate semi-paired data (i.e.,
    traditional samples not collected at all surveyed sites).
  - Improved integration of package print statements with user guide.
  - Updated default calculation of initial values for MCMC.

                         Changes in version 0.1                         

  - Initial version of the package on GitHub.