,
Ramnath Vaidyanathan [aut],
Karthik Ram [aut],
Milgram Eric [aut]| Title: | Work with 'GitHub' 'Gists' |
|---|---|
| Description: | Work with 'GitHub' 'gists' from 'R' (e.g., <https://en.wikipedia.org/wiki/GitHub#Gist>, <https://docs.github.com/en/github/writing-on-github/creating-gists/>). A 'gist' is simply one or more files with code/text/images/etc. This package allows the user to create new 'gists', update 'gists' with new files, rename files, delete files, get and delete 'gists', star and 'un-star' 'gists', fork 'gists', open a 'gist' in your default browser, get embed code for a 'gist', list 'gist' 'commits', and get rate limit information when 'authenticated'. Some requests require authentication and some do not. 'Gists' website: <https://gist.github.com/>. |
| Authors: | Scott Chamberlain [aut, cre] ,
Ramnath Vaidyanathan [aut],
Karthik Ram [aut],
Milgram Eric [aut] |
| Maintainer: | Scott Chamberlain <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 0.9.0.93 |
| Built: | 2024-08-29 23:15:28 UTC |
| Source: | https://github.com/ropensci/gistr |
R client for GitHub gists.
gistr allows you to peform actions on gists, including listing, forking, starring, creating, deleting, updating, etc.
There are two ways to authorise gistr to work with your GitHub account:
Generate a personal access token (PAT) at
https://docs.github.com/en/github/authenticating-to-github/creating-a-personal-access-token
and record it in the GITHUB_PAT envar.
Interactively login into your GitHub account and authorise with OAuth.
Using the GITHUB_PAT is recommended.
Scott Chamberlain [email protected]
Ramnath Vaidyanathan [email protected]
Karthik Ram [email protected]
Add files to a gist object
add_files(gist, ...) update_files(gist, ...) delete_files(gist, ...) rename_files(gist, ...)add_files(gist, ...) update_files(gist, ...) delete_files(gist, ...) rename_files(gist, ...)
gist |
A gist object or something coerceable to a gist |
... |
Curl options passed on to |
## Not run: add_files("~/stuff.Rmd") # update_files() # delete_files() # rename_files() ## End(Not run)## Not run: add_files("~/stuff.Rmd") # update_files() # delete_files() # rename_files() ## End(Not run)
Open a gist on GitHub
browse(gist, what = "html")browse(gist, what = "html")
gist |
A gist object or something that can be coerced to a gist object. |
what |
One of html (default), json, forks, commits, or comments. |
List gist commits
commits(gist, page = NULL, per_page = 30, ...)commits(gist, page = NULL, per_page = 30, ...)
gist |
A gist object or something coerceable to a gist |
page |
(integer) Page number to return. |
per_page |
(integer) Number of items to return per page. Default 30. Max 100. |
... |
Further named args to crul::verb-GET |
## Not run: gists()[[1]] %>% commits() gist(id = '1f399774e9ecc9153a6f') %>% commits(per_page = 5) # pass in a url gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% commits ## End(Not run)## Not run: gists()[[1]] %>% commits() gist(id = '1f399774e9ecc9153a6f') %>% commits(per_page = 5) # pass in a url gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% commits ## End(Not run)
Creating gists in gistr can be done with any of
three functions:
gist_create() - Create gists from files or code blocks,
using the GitHub HTTP API. Because this function uses the GitHub HTTP API,
it does not work for binary files. However, you can get around this for
images by using knitr's hook to upload images to eg., imgur. In addition,
it's difficult to include artifacts from the knit-ing process.
gist_create_git() - Create gists from files or code
blocks, using git. Because this function uses git, you have more
flexibility than with the above function: you can include any binary files,
and can easily upload all artifacts.
gist_create_obj() - Create gists from R objects: data.frame, list,
character string, matrix, or numeric. Uses the GitHub HTTP API.
It may seem a bit odd to have three separate functions for creating gists.
gist_create() was created first, and was out for a bit, so when
we had the idea to create gists via git (gist_create_git()) and
from R objects (gist_create_obj()), it made sense to have a
different API for creating gists via the HTTP API, git, and from R objects.
We could have thrown everything into gist_create(), but it would
have been a massive function, with far too many parameters.
Delete a gist
delete(gist, ...)delete(gist, ...)
gist |
A gist object or something coerceable to a gist |
... |
Curl options passed on to |
## Not run: gists("minepublic")[[29]] %>% delete() ## End(Not run)## Not run: gists("minepublic")[[29]] %>% delete() ## End(Not run)
Get embed script for a gist
embed(gist)embed(gist)
gist |
A gist object or something that can be coerced to a gist object. |
## Not run: gists()[[1]] %>% embed() # pass in a url gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% embed ## End(Not run)## Not run: gists()[[1]] %>% embed() # pass in a url gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% embed ## End(Not run)
Fork a gist
fork(gist, ...)fork(gist, ...)
gist |
A gist object or something coerceable to a gist |
... |
Further named args to crul::verb-GET |
A gist class object
## Not run: # fork a gist w <- gists()[[1]] %>% fork() # browse to newly forked gist browse(w) ## End(Not run)## Not run: # fork a gist w <- gists()[[1]] %>% fork() # browse to newly forked gist browse(w) ## End(Not run)
List forks on a gist
forks(gist, page = NULL, per_page = 30, ...)forks(gist, page = NULL, per_page = 30, ...)
gist |
A gist object or something coerceable to a gist |
page |
(integer) Page number to return. |
per_page |
(integer) Number of items to return per page. Default 30. Max 100. |
... |
Further named args to crul::verb-GET |
A list of gist class objects
## Not run: gist(id='1642874') %>% forks(per_page=2) gist(id = "8172796") %>% forks() # pass in a url gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% forks ## End(Not run)## Not run: gist(id='1642874') %>% forks(per_page=2) gist(id = "8172796") %>% forks() # pass in a url gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% forks ## End(Not run)
Get a gist
gist(id, revision = NULL, ...) as.gist(x)gist(id, revision = NULL, ...) as.gist(x)
id |
(character) A gist id, or a gist URL |
revision |
(character) A sha. optional |
... |
Curl options passed on to |
x |
Object to coerce. Can be an integer (gist id), string (gist id), a gist, or an list that can be coerced to a gist. |
If a file is larger than ~1 MB, the content of the file given back
is truncated, so you won't get the entire contents. In the return S3 object
that's printed, we tell you at the bottom whether each file is truncated or
not. If a file is, simply get the raw_url URL for the file (see
example below), then retrieve from that. If the file is very big, you may
need to clone the file using git, etc.
## Not run: gist('f1403260eb92f5dfa7e1') as.gist('f1403260eb92f5dfa7e1') as.gist(10) as.gist(gist('f1403260eb92f5dfa7e1')) # get a specific revision of a gist id <- 'c1e2cb547d9f22bd314da50fe9c7b503' gist(id, 'a5bc5c143beb697f23b2c320ff5a8dacf960b0f3') gist(id, 'b70d94a8222a4326dff46fc85bc69d0179bd1da2') gist(id, '648bb44ab9ae59d57b4ea5de7d85e24103717e8b') gist(id, '0259b13c7653dc95e20193133bcf71811888cbe6') # from a url, or partial url x <- "https://gist.github.com/expersso/4ac33b9c00751fddc7f8" x <- "gist.github.com/expersso/4ac33b9c00751fddc7f8" x <- "gist.github.com/4ac33b9c00751fddc7f8" x <- "expersso/4ac33b9c00751fddc7f8" as.gist(x) ids <- sapply(gists(), "[[", "id") gist(ids[1]) gist(ids[2]) gist(ids[3]) gist(ids[4]) gist(ids[1]) %>% browse() ## If a gist file is > a certain size it is truncated ## in this case, we let you know in the return object that it is truncated ## e.g. (bigfile <- gist(id = "b74b878fd7d9176a4c52")) ## then get the raw_url, and retrieve the file url <- bigfile$files$`plossmall.json`$raw_url ## End(Not run)## Not run: gist('f1403260eb92f5dfa7e1') as.gist('f1403260eb92f5dfa7e1') as.gist(10) as.gist(gist('f1403260eb92f5dfa7e1')) # get a specific revision of a gist id <- 'c1e2cb547d9f22bd314da50fe9c7b503' gist(id, 'a5bc5c143beb697f23b2c320ff5a8dacf960b0f3') gist(id, 'b70d94a8222a4326dff46fc85bc69d0179bd1da2') gist(id, '648bb44ab9ae59d57b4ea5de7d85e24103717e8b') gist(id, '0259b13c7653dc95e20193133bcf71811888cbe6') # from a url, or partial url x <- "https://gist.github.com/expersso/4ac33b9c00751fddc7f8" x <- "gist.github.com/expersso/4ac33b9c00751fddc7f8" x <- "gist.github.com/4ac33b9c00751fddc7f8" x <- "expersso/4ac33b9c00751fddc7f8" as.gist(x) ids <- sapply(gists(), "[[", "id") gist(ids[1]) gist(ids[2]) gist(ids[3]) gist(ids[4]) gist(ids[1]) %>% browse() ## If a gist file is > a certain size it is truncated ## in this case, we let you know in the return object that it is truncated ## e.g. (bigfile <- gist(id = "b74b878fd7d9176a4c52")) ## then get the raw_url, and retrieve the file url <- bigfile$files$`plossmall.json`$raw_url ## End(Not run)
This function is run automatically to allow gistr to access your GitHub account.
gist_auth(app = gistr_app, reauth = FALSE)gist_auth(app = gistr_app, reauth = FALSE)
app |
An |
reauth |
(logical) Force re-authorization? |
There are two ways to authorise gistr to work with your GitHub account:
Generate a personal access token with the gist scope selected, and set it
as the GITHUB_PAT environment variable per session using Sys.setenv
or across sessions by adding it to your .Renviron file or similar.
See
https://help.github.com/articles/creating-an-access-token-for-command-line-use
for help
Interactively login into your GitHub account and authorise with OAuth.
Using GITHUB_PAT is recommended.
a named list, with a single slot for Authorization, with a single
element with the token - this is the expected format needed when passed
down to the http request
## Not run: gist_auth() ## End(Not run)## Not run: gist_auth() ## End(Not run)
Create a gist
gist_create( files = NULL, description = "", public = TRUE, browse = TRUE, code = NULL, filename = "code.R", knit = FALSE, knitopts = list(), renderopts = list(), include_source = FALSE, imgur_inject = FALSE, rmarkdown = FALSE, ... )gist_create( files = NULL, description = "", public = TRUE, browse = TRUE, code = NULL, filename = "code.R", knit = FALSE, knitopts = list(), renderopts = list(), include_source = FALSE, imgur_inject = FALSE, rmarkdown = FALSE, ... )
files |
Files to upload. this or |
description |
(character) Brief description of gist (optional) |
public |
(logical) Whether gist is public (default: TRUE) |
browse |
(logical) To open newly create gist in default browser (default: TRUE) |
code |
Pass in any set of code. This can be a single R object, or
many lines of code wrapped in quotes, then curly brackets (see examples
below). this or |
filename |
Name of the file to create, only used if |
knit |
(logical) Knit code before posting as a gist? If the file
has a |
knitopts, renderopts
|
|
include_source |
(logical) Only applies if |
imgur_inject |
(logical) Inject |
rmarkdown |
(logical) If |
... |
Further args passed on to |
gist_create_obj(), gist_create_git()
## Not run: file <- tempfile() cat("hello world", file = file) gist_create(files=file, description='a new cool gist') file1 <- tempfile() file2 <- tempfile() cat("foo bar", file = file1) cat("foo bar", file = file2) gist_create(files=c(file1, file2), description='spocc demo files') # include any code by passing to the code parameter gist_create(code={' x <- letters numbers <- runif(10) numbers '}) # Knit an .Rmd file before posting as a gist file <- system.file("examples", "stuff.Rmd", package = "gistr") gist_create(file, description='a new cool gist', knit=TRUE) file <- system.file("examples", "plots.Rmd", package = "gistr") gist_create(file, description='some plots', knit=TRUE) # an .Rnw file file <- system.file("examples", "rnw_example.Rnw", package = "gistr") gist_create(file) gist_create(file, knit=TRUE) # Knit code input before posting as a gist gist_create(code={' ```{r} x <- letters (numbers <- runif(8)) ``` '}, knit=TRUE) url <- "https://raw.githubusercontent.com/ropensci/geojsonio/master/inst/examples/zillow_or.geojson" json <- crul::HttpClient$new(url)$get()$parse("UTF-8") gist_create(code = json, filename = "zillow_or.geojson") # Knit and include source file, so both files are in the gist file <- system.file("examples", "stuff.Rmd", package = "gistr") gist_create(file, knit=TRUE, include_source=TRUE) gist_create(code={' ```{r} x <- letters (numbers <- runif(8)) ``` '}, filename="code.Rmd", knit=TRUE, include_source=TRUE) # Uploading images created during knit process ## using imgur - if you're file uses imgur or similar, you're good file <- system.file("examples", "plots_imgur.Rmd", package = "gistr") cat(readLines(file), sep = "\n") # peek at file gist_create(file, knit=TRUE) ## if not, GitHub doesn't allow upload of binary files via the HTTP API ## (which gistr uses) - so see gist_create_git(), which uses git file <- system.file("examples", "plots.Rmd", package = "gistr") gist_create(file, knit=TRUE, imgur_inject = TRUE) ## works with ggplot2 as well file <- system.file("examples", "ggplot_imgur.Rmd", package = "gistr") gist_create(file, knit=TRUE) # Render `.R` files file <- system.file("examples", "example1.R", package = "gistr") cat(readLines(file), sep = "\n") # peek at file gist_create(file, knit = TRUE) gist_create(file, knit = TRUE, include_source = TRUE) ## many files (file1 <- system.file("examples", "example1.R", package = "gistr")) (file2 <- system.file("examples", "example2.R", package = "gistr")) cat(readLines(file1), sep = "\n") # peek at file cat(readLines(file2), sep = "\n") # peek at file gist_create(files=list(file1, file2), knit = TRUE) ### three at once, some .R and some .Rmd file3 <- system.file("examples", "plots_imgur.Rmd", package = "gistr") gist_create(files=list(file1, file2, file3), knit = TRUE) gist_create(files=list(file1, file2, file3), knit = TRUE, include_source = TRUE) # Use rmarkdown::render instead of knitr::knit file <- system.file("examples", "rmarkdown_eg.Rmd", package = "gistr") gist_create(file, knit = TRUE, rmarkdown = TRUE, imgur_inject = TRUE, renderopts = list(output_format = "md_document")) ## End(Not run)## Not run: file <- tempfile() cat("hello world", file = file) gist_create(files=file, description='a new cool gist') file1 <- tempfile() file2 <- tempfile() cat("foo bar", file = file1) cat("foo bar", file = file2) gist_create(files=c(file1, file2), description='spocc demo files') # include any code by passing to the code parameter gist_create(code={' x <- letters numbers <- runif(10) numbers '}) # Knit an .Rmd file before posting as a gist file <- system.file("examples", "stuff.Rmd", package = "gistr") gist_create(file, description='a new cool gist', knit=TRUE) file <- system.file("examples", "plots.Rmd", package = "gistr") gist_create(file, description='some plots', knit=TRUE) # an .Rnw file file <- system.file("examples", "rnw_example.Rnw", package = "gistr") gist_create(file) gist_create(file, knit=TRUE) # Knit code input before posting as a gist gist_create(code={' ```{r} x <- letters (numbers <- runif(8)) ``` '}, knit=TRUE) url <- "https://raw.githubusercontent.com/ropensci/geojsonio/master/inst/examples/zillow_or.geojson" json <- crul::HttpClient$new(url)$get()$parse("UTF-8") gist_create(code = json, filename = "zillow_or.geojson") # Knit and include source file, so both files are in the gist file <- system.file("examples", "stuff.Rmd", package = "gistr") gist_create(file, knit=TRUE, include_source=TRUE) gist_create(code={' ```{r} x <- letters (numbers <- runif(8)) ``` '}, filename="code.Rmd", knit=TRUE, include_source=TRUE) # Uploading images created during knit process ## using imgur - if you're file uses imgur or similar, you're good file <- system.file("examples", "plots_imgur.Rmd", package = "gistr") cat(readLines(file), sep = "\n") # peek at file gist_create(file, knit=TRUE) ## if not, GitHub doesn't allow upload of binary files via the HTTP API ## (which gistr uses) - so see gist_create_git(), which uses git file <- system.file("examples", "plots.Rmd", package = "gistr") gist_create(file, knit=TRUE, imgur_inject = TRUE) ## works with ggplot2 as well file <- system.file("examples", "ggplot_imgur.Rmd", package = "gistr") gist_create(file, knit=TRUE) # Render `.R` files file <- system.file("examples", "example1.R", package = "gistr") cat(readLines(file), sep = "\n") # peek at file gist_create(file, knit = TRUE) gist_create(file, knit = TRUE, include_source = TRUE) ## many files (file1 <- system.file("examples", "example1.R", package = "gistr")) (file2 <- system.file("examples", "example2.R", package = "gistr")) cat(readLines(file1), sep = "\n") # peek at file cat(readLines(file2), sep = "\n") # peek at file gist_create(files=list(file1, file2), knit = TRUE) ### three at once, some .R and some .Rmd file3 <- system.file("examples", "plots_imgur.Rmd", package = "gistr") gist_create(files=list(file1, file2, file3), knit = TRUE) gist_create(files=list(file1, file2, file3), knit = TRUE, include_source = TRUE) # Use rmarkdown::render instead of knitr::knit file <- system.file("examples", "rmarkdown_eg.Rmd", package = "gistr") gist_create(file, knit = TRUE, rmarkdown = TRUE, imgur_inject = TRUE, renderopts = list(output_format = "md_document")) ## End(Not run)
Create a gist via git instead of the GitHub Gists HTTP API
gist_create_git( files = NULL, description = "", public = TRUE, browse = TRUE, knit = FALSE, code = NULL, filename = "code.R", knitopts = list(), renderopts = list(), include_source = FALSE, artifacts = FALSE, imgur_inject = FALSE, git_method = "ssh", sleep = 1, ... )gist_create_git( files = NULL, description = "", public = TRUE, browse = TRUE, knit = FALSE, code = NULL, filename = "code.R", knitopts = list(), renderopts = list(), include_source = FALSE, artifacts = FALSE, imgur_inject = FALSE, git_method = "ssh", sleep = 1, ... )
files |
Files to upload. this or |
description |
(character) Brief description of gist (optional) |
public |
(logical) Whether gist is public (default: TRUE) |
browse |
(logical) To open newly create gist in default browser (default: TRUE) |
knit |
(logical) Knit code before posting as a gist? If the file
has a |
code |
Pass in any set of code. This can be a single R object, or
many lines of code wrapped in quotes, then curly brackets (see examples
below). this or |
filename |
Name of the file to create, only used if |
knitopts, renderopts
|
|
include_source |
(logical) Only applies if |
artifacts |
(logical/character) Include artifacts or not.
If |
imgur_inject |
(logical) Inject |
git_method |
(character) One of ssh (default) or https. If a remote already exists, we use that remote, and this parameter is ignored. |
sleep |
(integer) Seconds to sleep after creating gist, but before
collecting metadata on the gist. If uploading a lot of stuff, you may want to
set this to a higher value, otherwise, you may not get accurate metadata for
your gist. You can of course always refresh afterwards by calling |
... |
Further args passed on to |
Note that when browse=TRUE there is a slight delay in when
we open up the gist in your default browser and when the data will display
in the gist. We could have this function sleep a while and guess when it
will be ready, but instead we open your gist right after we're done sending
the data to GitHub. Make sure to refresh the page if you don't see your
content right away.
Likewise, the object that is returned from this function call may not have
the updated and correct file information. You can retrieve that easily by
calling gist() with the gist id.
This function uses git instead of the HTTP API, and thus requires
the R package git2r. If you don't have git2r installed, and
try to use this function, it will stop and tell you to install git2r.
This function using git is better suited than gist_create()
for use cases involving:
Big files - The GitHub API allows only files of up to 1 MB in size. Using git we can get around that limit.
Binary files - Often artifacts created are binary files like
.png. The GitHub API doesn't allow transport of binary files, but
we can do that with git.
Another difference between this function and gist_create() is
that this function can collect all artifacts coming out of a knit process.
If a gist is somehow deleted, or the remote changes, when you try to push
to the same gist again, everything should be fine. We now use
tryCatch on the push attempt, and if it fails, we'll add a new
remote (which means a new gist), and push again.
gist_create(), gist_create_obj()
## Not run: # prepare a directory and a file unlink("~/gitgist", recursive = TRUE) dir.create("~/gitgist") file <- system.file("examples", "stuff.md", package = "gistr") writeLines(readLines(file), con = "~/gitgist/stuff.md") # create a gist gist_create_git(files = "~/gitgist/stuff.md") ## more than one file can be passed in unlink("~/gitgist2", recursive = TRUE) dir.create("~/gitgist2") file.copy(file, "~/gitgist2/") cat("hello world", file = "~/gitgist2/hello_world.md") list.files("~/gitgist2") gist_create_git(c("~/gitgist2/stuff.md", "~/gitgist2/hello_world.md")) # Include all files in a directory unlink("~/gitgist3", recursive = TRUE) dir.create("~/gitgist3") cat("foo bar", file="~/gitgist3/foobar.txt") cat("hello", file="~/gitgist3/hello.txt") list.files("~/gitgist3") gist_create_git("~/gitgist3") # binary files png <- system.file("examples", "file.png", package = "gistr") unlink("~/gitgist4", recursive = TRUE) dir.create("~/gitgist4") file.copy(png, "~/gitgist4/") list.files("~/gitgist4") gist_create_git(files = "~/gitgist4/file.png") # knit files first, then push up # note: by default we don't upload images, but you can do that, # see next example rmd <- system.file("examples", "plots.Rmd", package = "gistr") unlink("~/gitgist5", recursive = TRUE) dir.create("~/gitgist5") file.copy(rmd, "~/gitgist5/") list.files("~/gitgist5") gist_create_git("~/gitgist5/plots.Rmd", knit = TRUE) # collect all/any artifacts from knitting process arts <- system.file("examples", "artifacts_eg1.Rmd", package = "gistr") unlink("~/gitgist6", recursive = TRUE) dir.create("~/gitgist6") file.copy(arts, "~/gitgist6/") list.files("~/gitgist6") gist_create_git("~/gitgist6/artifacts_eg1.Rmd", knit = TRUE, artifacts = TRUE) # from a code block gist_create_git(code={' x <- letters numbers <- runif(8) numbers [1] 0.3229318 0.5933054 0.7778408 0.3898947 0.1309717 0.7501378 0.3206379 0.3379005 '}, filename="my_cool_code.R") # Use https instead of ssh png <- system.file("examples", "file.png", package = "gistr") unlink("~/gitgist7", recursive = TRUE) dir.create("~/gitgist7") file.copy(png, "~/gitgist7/") list.files("~/gitgist7") gist_create_git(files = "~/gitgist7/file.png", git_method = "https") ## End(Not run)## Not run: # prepare a directory and a file unlink("~/gitgist", recursive = TRUE) dir.create("~/gitgist") file <- system.file("examples", "stuff.md", package = "gistr") writeLines(readLines(file), con = "~/gitgist/stuff.md") # create a gist gist_create_git(files = "~/gitgist/stuff.md") ## more than one file can be passed in unlink("~/gitgist2", recursive = TRUE) dir.create("~/gitgist2") file.copy(file, "~/gitgist2/") cat("hello world", file = "~/gitgist2/hello_world.md") list.files("~/gitgist2") gist_create_git(c("~/gitgist2/stuff.md", "~/gitgist2/hello_world.md")) # Include all files in a directory unlink("~/gitgist3", recursive = TRUE) dir.create("~/gitgist3") cat("foo bar", file="~/gitgist3/foobar.txt") cat("hello", file="~/gitgist3/hello.txt") list.files("~/gitgist3") gist_create_git("~/gitgist3") # binary files png <- system.file("examples", "file.png", package = "gistr") unlink("~/gitgist4", recursive = TRUE) dir.create("~/gitgist4") file.copy(png, "~/gitgist4/") list.files("~/gitgist4") gist_create_git(files = "~/gitgist4/file.png") # knit files first, then push up # note: by default we don't upload images, but you can do that, # see next example rmd <- system.file("examples", "plots.Rmd", package = "gistr") unlink("~/gitgist5", recursive = TRUE) dir.create("~/gitgist5") file.copy(rmd, "~/gitgist5/") list.files("~/gitgist5") gist_create_git("~/gitgist5/plots.Rmd", knit = TRUE) # collect all/any artifacts from knitting process arts <- system.file("examples", "artifacts_eg1.Rmd", package = "gistr") unlink("~/gitgist6", recursive = TRUE) dir.create("~/gitgist6") file.copy(arts, "~/gitgist6/") list.files("~/gitgist6") gist_create_git("~/gitgist6/artifacts_eg1.Rmd", knit = TRUE, artifacts = TRUE) # from a code block gist_create_git(code={' x <- letters numbers <- runif(8) numbers [1] 0.3229318 0.5933054 0.7778408 0.3898947 0.1309717 0.7501378 0.3206379 0.3379005 '}, filename="my_cool_code.R") # Use https instead of ssh png <- system.file("examples", "file.png", package = "gistr") unlink("~/gitgist7", recursive = TRUE) dir.create("~/gitgist7") file.copy(png, "~/gitgist7/") list.files("~/gitgist7") gist_create_git(files = "~/gitgist7/file.png", git_method = "https") ## End(Not run)
Create a gist from an R object
gist_create_obj( x = NULL, description = "", public = TRUE, browse = TRUE, pretty = TRUE, filename = "file.txt", ... )gist_create_obj( x = NULL, description = "", public = TRUE, browse = TRUE, pretty = TRUE, filename = "file.txt", ... )
x |
An R object, any of data.frame, matrix, list, character, numeric |
description |
(character) Brief description of gist (optional) |
public |
(logical) Whether gist is public (default: |
browse |
(logical) To open newly create gist in default browser
(default: |
pretty |
(logical) For data.frame and matrix objects, create
a markdown table. If FALSE, pushes up json. (default: |
filename |
Name of the file to create. Default: |
... |
Further args passed on to crul::verb-POST |
This function is specifically for going from R objects to a gist,
whereas gist_create() is for going from files or executing code
gist_create(), gist_create_git()
## Not run: ## data.frame ### by default makes pretty table in markdown format row.names(mtcars) <- NULL gist_create_obj(mtcars) gist_create_obj(iris) ### or just push up json gist_create_obj(mtcars, pretty = FALSE) ## matrix gist_create_obj(as.matrix(mtcars)) ## list gist_create_obj(apply(mtcars, 1, as.list)) ## character gist_create_obj("hello, world") ## numeric gist_create_obj(runif(10)) ## Assign a specific file name gist_create_obj(" ## header2 hey there!", filename = "my_markdown.md") ## End(Not run)## Not run: ## data.frame ### by default makes pretty table in markdown format row.names(mtcars) <- NULL gist_create_obj(mtcars) gist_create_obj(iris) ### or just push up json gist_create_obj(mtcars, pretty = FALSE) ## matrix gist_create_obj(as.matrix(mtcars)) ## list gist_create_obj(apply(mtcars, 1, as.list)) ## character gist_create_obj("hello, world") ## numeric gist_create_obj(runif(10)) ## Assign a specific file name gist_create_obj(" ## header2 hey there!", filename = "my_markdown.md") ## End(Not run)
Takes a gist object and a input geojson file name and renders fullscreen map
gist_map(x, browse = TRUE)gist_map(x, browse = TRUE)
x |
An object of class |
browse |
Default: |
## Not run: file <- system.file("examples", "ecoengine_eg.geojson", package = "gistr") gist_id <- gist_create(file, browse = FALSE) gist_map(gist_id) ## End(Not run)## Not run: file <- system.file("examples", "ecoengine_eg.geojson", package = "gistr") gist_id <- gist_create(file, browse = FALSE) gist_map(gist_id) ## End(Not run)
Save gist files to disk
gist_save(gist, path = ".") gist_open(x)gist_save(gist, path = ".") gist_open(x)
gist |
A gist object or something coerceable to a gist |
path |
Root path to write to, a directory, not a file b/c a gist can contain many files. A folder is created with name of the gist id within this root directory. File names will be the same as given in the gist. |
x |
An object of class |
gist_save: files are written into a new folder, named by the gist id,
e.g., a65ac7e56b7b3f746913
gist_open: opens files in your editor/R GUI. Internally, uses
file.edit() to open files, using getOption("editor") to
open the files. If you're in R.app or RStudio, or other IDE's, files will
open in the IDE (I think).
An object of class gist_files, S3 object containing file
paths
## Not run: gist("a65ac7e56b7b3f746913") %>% gist_save() gist("a65ac7e56b7b3f746913") %>% gist_save() %>% gist_open() gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% gist_save() ## End(Not run)## Not run: gist("a65ac7e56b7b3f746913") %>% gist_save() gist("a65ac7e56b7b3f746913") %>% gist_save() %>% gist_open() gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% gist_save() ## End(Not run)
List public gists, your own public gists, all your gists, by gist id, or query by date.
gists(what = "public", since = NULL, page = NULL, per_page = 30, ...)gists(what = "public", since = NULL, page = NULL, per_page = 30, ...)
what |
(character) What gists to return. One of public, minepublic, mineall, or starred. If an id is given for a gist, this parameter is ignored. |
since |
(character) A timestamp in ISO 8601 format: YYYY-MM-DDTHH:MM:SSZ. Only gists updated at or after this time are returned. |
page |
(integer) Page number to return. |
per_page |
(integer) Number of items to return per page. Default 30. Max 100. |
... |
Curl options passed on to |
When what = "mineall", we use
getOption("github.username") internally to get your GitHub user name.
Make sure to set your GitHub user name
as an R option like options(github.username = "foobar") in your
.Rprofile file. If we can't find you're user name, we'll stop with an
error.
## Not run: # Public gists gists() gists(per_page=2) gists(page=3) # Public gists created since X time gists(since='2014-05-26T00:00:00Z') # Your public gists gists('minepublic') gists('minepublic', per_page=2) # Your private and public gists gists('mineall') # Your starred gists gists('starred') # pass in curl options gists(per_page=1, verbose=TRUE) ## End(Not run)## Not run: # Public gists gists() gists(per_page=2) gists(page=3) # Public gists created since X time gists(since='2014-05-26T00:00:00Z') # Your public gists gists('minepublic') gists('minepublic', per_page=2) # Your private and public gists gists('mineall') # Your starred gists gists('starred') # pass in curl options gists(per_page=1, verbose=TRUE) ## End(Not run)
Get rate limit information
rate_limit(...)rate_limit(...)
... |
Named args to crul::verb-GET |
## Not run: rate_limit() ## End(Not run)## Not run: rate_limit() ## End(Not run)
Run a .Rmd file
run(x, filename = "code.R", knitopts = list())run(x, filename = "code.R", knitopts = list())
x |
Input, one of: code wrapped in curly brackets and quotes, a file path to an .Rmd file, or a gist. |
filename |
Name of the file to create, only used if |
knitopts |
(list) List of variables passed on to
|
A path, unless a gist object is passed in, in which case a gist object is returned.
## Not run: # run a local file file <- system.file("examples", "stuff.Rmd", package = "gistr") run(file) %>% gist_create # run code run({' ```{r} x <- letters (numbers <- runif(8)) ``` '}) %>% gist_create # run a file from a gist, has to get file first gists('minepublic')[[2]] %>% run() %>% update() ## End(Not run)## Not run: # run a local file file <- system.file("examples", "stuff.Rmd", package = "gistr") run(file) %>% gist_create # run code run({' ```{r} x <- letters (numbers <- runif(8)) ``` '}) %>% gist_create # run a file from a gist, has to get file first gists('minepublic')[[2]] %>% run() %>% update() ## End(Not run)
Star a gist
star(gist, ...) unstar(gist, ...) star_check(gist, ...)star(gist, ...) unstar(gist, ...) star_check(gist, ...)
gist |
A gist object or something that can be coerced to a gist object. |
... |
Curl options passed on to |
A message, and a gist object, the same one input to the function.
## Not run: id <- '4ac33b9c00751fddc7f8' gist(id) %>% star() gist(id) %>% star_check() gist(id) %>% unstar() gist(id) %>% unstar() %>% star() gist(id) %>% star_check() gist(id) %>% star() %>% star_check() # pass in a url x <- "https://gist.github.com/expersso/4ac33b9c00751fddc7f8" gist(x) %>% star gist(x) %>% unstar ## End(Not run)## Not run: id <- '4ac33b9c00751fddc7f8' gist(id) %>% star() gist(id) %>% star_check() gist(id) %>% unstar() gist(id) %>% unstar() %>% star() gist(id) %>% star_check() gist(id) %>% star() %>% star_check() # pass in a url x <- "https://gist.github.com/expersso/4ac33b9c00751fddc7f8" gist(x) %>% star gist(x) %>% unstar ## End(Not run)
Make a table from gist or commit class or a list of either
tabl(x, ...) tabl_data(x)tabl(x, ...) tabl_data(x)
x |
Either a gist or commit class object or a list of either |
... |
Ignored |
For commits we return a single data.frame. For gists, we always
return a list so that we are returning data consistently,
regardless of variable return data. So you can always index to the main
data.frame with gist metadata and file info by doing result$data,
and likewise for forks result$forks and history
result$history
A data.frame or list of data.frame's
## Not run: # from a gist object x <- as.gist('f1403260eb92f5dfa7e1') res <- tabl(x) res$data res$forks res$history # from a list ss <- gists('minepublic') tabl(ss[1:3]) lapply(tabl(ss[1:3]), "[[", "data") # index to data slots, but also make single data.frame tabl_data(tabl(ss[1:3])) ## manipulate with dplyr library("dplyr") tabl_data(tabl(ss[1:30])) %>% select(id, description, owner_login) %>% filter(grepl("gist gist gist", description)) # commits x <- gists()[[2]] %>% commits() tabl(x[[1]]) ## many x <- sapply(gists(per_page = 100), commits) tabl(x) %>% select(id, login, change_status.total, url) %>% filter(change_status.total > 50) # pass in a url gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% tabl ## many gg <- gists() (urls <- vapply(gg, "[[", "", "html_url")) lapply(urls[1:5], as.gist) %>% tabl() # gist with forks and history gist('1642874') %>% tabl # gist with history, no forks gist('c96d2e453c95d0166408') %>% tabl ## End(Not run)## Not run: # from a gist object x <- as.gist('f1403260eb92f5dfa7e1') res <- tabl(x) res$data res$forks res$history # from a list ss <- gists('minepublic') tabl(ss[1:3]) lapply(tabl(ss[1:3]), "[[", "data") # index to data slots, but also make single data.frame tabl_data(tabl(ss[1:3])) ## manipulate with dplyr library("dplyr") tabl_data(tabl(ss[1:30])) %>% select(id, description, owner_login) %>% filter(grepl("gist gist gist", description)) # commits x <- gists()[[2]] %>% commits() tabl(x[[1]]) ## many x <- sapply(gists(per_page = 100), commits) tabl(x) %>% select(id, login, change_status.total, url) %>% filter(change_status.total > 50) # pass in a url gist("https://gist.github.com/expersso/4ac33b9c00751fddc7f8") %>% tabl ## many gg <- gists() (urls <- vapply(gg, "[[", "", "html_url")) lapply(urls[1:5], as.gist) %>% tabl() # gist with forks and history gist('1642874') %>% tabl # gist with history, no forks gist('c96d2e453c95d0166408') %>% tabl ## End(Not run)
Update/modify a gist
update(gist, description = gist$description, ...)update(gist, description = gist$description, ...)
gist |
A gist object or something coerceable to a gist |
description |
(character) Brief description of gist (optional) |
... |
Curl options passed on to |
an object of class gist
## Not run: file1 <- system.file("examples", "alm.md", package = "gistr") file2 <- system.file("examples", "zoo.json", package = "gistr") # add new files gists(what = "minepublic")[[3]] %>% add_files(file1, file2) %>% update() # update existing files ### file name has to match to current name gists(what = "minepublic")[[3]] %>% update_files(file1) %>% update() # delete existing files ### again, file name has to match to current name gists(what = "minepublic")[[3]] %>% delete_files(file1, file2) %>% update() # rename existing files # For some reason, this operation has to upload the content too ### first name is old file name with path (must match), and second is ### new file name (w/o path) ## add first gists(what = "minepublic")[[3]] %>% add_files(file1, file2) %>% update() ## then rename gists(what = "minepublic")[[3]] %>% rename_files(list(file1, "newfile.md")) %>% update() ### you can pass in many renames gists(what = "minepublic")[[3]] %>% rename_files(list(file1, "what.md"), list(file2, "new.json")) %>% update() ## End(Not run)## Not run: file1 <- system.file("examples", "alm.md", package = "gistr") file2 <- system.file("examples", "zoo.json", package = "gistr") # add new files gists(what = "minepublic")[[3]] %>% add_files(file1, file2) %>% update() # update existing files ### file name has to match to current name gists(what = "minepublic")[[3]] %>% update_files(file1) %>% update() # delete existing files ### again, file name has to match to current name gists(what = "minepublic")[[3]] %>% delete_files(file1, file2) %>% update() # rename existing files # For some reason, this operation has to upload the content too ### first name is old file name with path (must match), and second is ### new file name (w/o path) ## add first gists(what = "minepublic")[[3]] %>% add_files(file1, file2) %>% update() ## then rename gists(what = "minepublic")[[3]] %>% rename_files(list(file1, "newfile.md")) %>% update() ### you can pass in many renames gists(what = "minepublic")[[3]] %>% rename_files(list(file1, "what.md"), list(file2, "new.json")) %>% update() ## End(Not run)