# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "onekp" in publications use:'
type: software
license: MIT
title: 'onekp: Retrieve Data from the 1000 Plants Initiative (1KP)'
version: 0.3.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.onekp
abstract: The 1000 Plants Initiative (www.onekp.com) has sequenced the transcriptomes
  of over 1000 plant species. This package allows these sequences and metadata to
  be retrieved and filtered by code, species or recursively by clade. Scientific names
  and NCBI taxonomy IDs are both supported.
authors:
- family-names: Rijan
  given-names: Dhakal
  email: rijan_dhakal@tutanota.com
- family-names: Arendsee
  given-names: Zebulun
  email: zbwrnz@gmail.com
preferred-citation:
  type: article
  title: Phylotranscriptomic analysis of the origin and early diversification of land
    plants
  authors:
  - name: Wickett
  - family-names: J
    given-names: Norman
  - name: Mirarab
  - name: Siavash
  - name: Nguyen
  - name: Nam
  - name: Warnow
  - name: Tandy
  - name: Carpenter
  - name: Eric
  - name: Matasci
  - name: Naim
  - name: Ayyampalayam
  - name: Saravanaraj
  - name: Barker
  - family-names: S
    given-names: Michael
  - name: Burleigh
  - family-names: Gordon
    given-names: J
  - name: Gitzendanner
  - family-names: A
    given-names: Matthew
  - name: others
  journal: Proceedings of the National Academy of Sciences
  volume: '111'
  issue: '45'
  year: '2014'
  publisher:
    name: National Acad Sciences
  start: E4859
  end: E4868
repository: https://ropensci.r-universe.dev
repository-code: https://github.com/ropensci/onekp
commit: 6d9f0241194c0cb5d4e1c6422c0444d0d343e76e
url: https://docs.ropensci.org/onekp
contact:
- family-names: Rijan
  given-names: Dhakal
  email: rijan_dhakal@tutanota.com
references:
- type: article
  title: Data access for the 1,000 Plants (1KP) project
  authors:
  - name: Matasci
  - name: Naim
  - name: Hung
  - name: Ling-Hong
  - name: Yan
  - name: Zhixiang
  - name: Carpenter
  - family-names: J
    given-names: Eric
  - name: Wickett
  - family-names: J
    given-names: Norman
  - name: Mirarab
  - name: Siavash
  - name: Nguyen
  - name: Nam
  - name: Warnow
  - name: Tandy
  - name: Ayyampalayam
  - name: Saravanaraj
  - name: Barker
  - name: Michael
  - name: others
  journal: Gigascience
  volume: '3'
  issue: '1'
  year: '2014'
  publisher:
    name: BioMed Central
  start: '17'
- type: article
  title: 'SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads'
  authors:
  - name: Xie
  - name: Yinlong
  - name: Wu
  - name: Gengxiong
  - name: Tang
  - name: Jingbo
  - name: Luo
  - name: Ruibang
  - name: Patterson
  - name: Jordan
  - name: Liu
  - name: Shanlin
  - name: Huang
  - name: Weihua
  - name: He
  - name: Guangzhu
  - name: Gu
  - name: Shengchang
  - name: Li
  - name: Shengkang
  - name: others
  journal: Bioinformatics
  volume: '30'
  issue: '12'
  year: '2014'
  publisher:
    name: Oxford University Press
  start: '1660'
  end: '1666'
- type: article
  title: Evaluating methods for isolating total RNA and predicting the success of
    sequencing phylogenetically diverse plant transcriptomes
  authors:
  - name: Johnson
  - family-names: TJ
    given-names: Marc
  - name: Carpenter
  - family-names: J
    given-names: Eric
  - name: Tian
  - name: Zhijian
  - name: Bruskiewich
  - name: Richard
  - name: Burris
  - family-names: 'N'
    given-names: Jason
  - name: Carrigan
  - family-names: T
    given-names: Charlotte
  - name: Chase
  - family-names: W
    given-names: Mark
  - name: Clarke
  - family-names: D
    given-names: Neil
  - name: Covshoff
  - name: Sarah
  - name: Edger
  - family-names: P
    given-names: Patrick
  - name: others
  journal: PloS one
  volume: '7'
  issue: '11'
  year: '2012'
  publisher:
    name: Public Library of Science
  start: e50226