Type: Package
Package: phylotaR
Title: Automated Phylogenetic Sequence Cluster Identification from
        'GenBank'
Version: 1.3.0
Authors@R: c(
    person("Shixiang", "Wang", , "w_shixiang@163.com", role = c("aut", "cre")),
    person("Hannes", "Hettling", role = "aut"),
    person("Rutger", "Vos", role = "aut"),
    person("Alexander", "Zizka", role = "aut"),
    person("Dom", "Bennett", role = "aut"),
    person("Alexandre", "Antonelli", role = "aut")
  )
Description: A pipeline for the identification, within taxonomic
        groups, of orthologous sequence clusters from 'GenBank'
        <https://www.ncbi.nlm.nih.gov/genbank/> as the first step in a
        phylogenetic analysis. The pipeline depends on a local
        alignment search tool and is, therefore, not dependent on
        differences in gene naming conventions and naming errors.
License: MIT + file LICENSE
URL: https://docs.ropensci.org/phylotaR/,
        https://github.com/ropensci/phylotaR#readme
BugReports: https://github.com/ropensci/phylotaR/issues
Depends: methods, R (>= 3.5.0)
Imports: ape, bigmemory, ggplot2, igraph, plyr, R.utils, rentrez,
        restez (>= 2.1.0), RJSONIO, stringr, sys, treemapify, XML
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.1
SystemRequirements: BLAST+ (>=2.0)
X-schema.org-isPartOf: https://ropensci.org
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev make libharfbuzz-dev libicu-dev
        libjpeg-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils
Repository: https://ropensci.r-universe.dev
Date/Publication: 2026-03-20 03:14:09 UTC
RemoteUrl: https://github.com/ropensci/phylotaR
RemoteRef: master
RemoteSha: 648d5733c8f44213238726f7110dca8874023490
NeedsCompilation: yes
Packaged: 2026-07-01 08:27:58 UTC; root
Author: Shixiang Wang [aut, cre],
  Hannes Hettling [aut],
  Rutger Vos [aut],
  Alexander Zizka [aut],
  Dom Bennett [aut],
  Alexandre Antonelli [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>