Changes in version 0.1.2 New checks and check improvements - Removed numerous skip_on_os() conditions in tests (#378) - Added check to make sure statistical standards document compliance for at least one specific category, not just general. - Added check for packages using statistical standards only in a single directory or file (check-srr), improving detection of incomplete standards adoption. - Elevated sp to the "truly obsolete" category in the obsolete-package-deps check. - Added rm_global_assign_in_memoise to handle <<- within memoise calls, preventing false positives in the global-assignment check. - Fixed output of obsolete_pkg_deps function and improved ordering of checks via order_checks. Infrastructure and CI - Added dependabot.yml to keep GitHub Actions dependencies up to date; bumped actions/checkout, actions/github-script, docker/build-push-action, docker/setup-buildx-action, and docker/login-action to current versions. - Updated check-standard workflow; improved test-coverage workflow. - Switched off bspm before final sf reinstall in Dockerfile to fix library-linkage issues; re-installed sf at end of Docker script. - Added all packages from r-universe-org/base-image to Dockerfile. - Updated test snapshots for new srr standards (v0.2) and for changes in pkgstats output. Bug fixes - Fixed minor bug in parse_pkg_deps and order_checks. - Fixed catch lintr errors so that lintr failures no longer crash the full check run. - Improved render_markdown/render_md2html and added examples and return values to all exported functions. Documentation - Updated README to describe the package-check workflow more clearly. - Updated monthly GHA workflow message. - Renamed render_markdown to render_md2html for clarity. - Added pkgcheck GitHub Action integration (add pkgcheck action). Changes in version 0.1.1 New checks - Added check-fns-have-return-vals: flags exported functions whose roxygen documentation lacks a @return tag. - Added check-default-branch: warns when the default git branch is not main. - Implemented a three-way symbol set (heavy_check_mark, eyes, heavy_multiplication_x) to distinguish clear passes, marginal results, and clear failures across all check output. Check improvements - Rewrote the srr failure message to list each missing standard individually, making it actionable for package authors. - Improved fns_have_return_vals to use tools::parse_Rd instead of roxygen2 for parsing return values, making it more robust. - Removed fns_have_return_vals from the print method; results now appear only in the summary method. - Fixed print output when an srr check fails entirely. Documentation and vignettes - Restructured README with a clearer check-by-check guide. - Added list-checks vignette documenting every check. - Updated all pkgchk_ function documentation pages; added roxygen2 family tags throughout. - Added @schneiderpy to the contributors list. Infrastructure - Switched Docker base image from bspm to r2u for faster, more reliable package installation. - Switched Dockerfile base OS from ubuntugis to ubuntugis-unstable to fix spatial library compatibility. - Added missing roxygen2 family tag for the check-has-codemeta family. - Moved seasonal packages from the roreviewapi Dockerfile to this one. - Updated allcontributors list. Changes in version 0.1.0 New checks - Added check-unique-fn-names: verifies that no exported function name duplicates a name already used by a CRAN package (fn_names_on_cran). - Added check-renv / renv_activated: detects packages where renv is activated in the project, which can interfere with dependency resolution. Check improvements - Renamed has_renv check to renv_activated with an improved user-facing message. - Changed misc_check_counts to a dedicated summary function replacing has_misc_checks. - Improved format-checks.R to handle checks with empty print methods. - Fixed check_left_assigns to correctly handle edge cases. - Fixed pkgchk_fns_have_exs to exclude package and data docTypes from the examples check. - Added rm_global_assigns_in_ref_class to avoid false positives from <<- inside R5/Reference Class definitions. API and caching - Moved the cache directory from cache/ to cache/R/ for cleaner organisation. - Added use_cache parameter to the main pkgcheck function, allowing callers to bypass the cache. - Renamed cache_pkgstats_component to cache_pkgcheck_... for naming consistency. - Switched CI-results fetching from httr / jsonlite to jsonlite only. Infrastructure and CI - Added goodpractice as a GitHub remote dependency (temporarily removed from CRAN) in all workflows and Dockerfile. - Moved Julia pre-installation to the Dockerfile; added explicit branch parameter to get_latest_commit. - Updated roxygen2 to 7.2.1; updated various workflow job names. - Added use_github_action_pkgcheck documentation; described pkgcheck-action in README. - Renamed the check workflow job from check to pkgcheck. Documentation - Described testing new checks in the "Extending Checks" vignette. Changes in version 0.0.3 New checks - Added check-license: validates that the package LICENSE field is a recognised CRAN-compatible identifier (closes #73). - Added check-pkgdown: detects whether a pkgdown site exists and is configured (closes #100). - Added check-obsolete-pkg-deps: flags dependencies on packages considered truly or potentially obsolete on CRAN (closes #44). - Added GitHub-Actions default-branch check: warns when the default branch name differs from main. Check improvements - Improved check-fns-have-exs to exclude dataset documentation entries (closes #103). - Improved check-on-cran with a tryCatch around the CRAN URL test. - Improved check-scrap to detect the same scrap file appearing in different locations. - Deactivated the roxygen2 family tag check (closes #100) as it produced many false positives. - Fixed pkgchk_uses_roxygen2; fixed check_fns_have_exs logic. Markdown and print output - Implemented msg_pre / msg_post print sub-methods for all check types, providing a consistent before/after hook pattern (closes #108). - Added pkgfns_as_details section to markdown output, listing all exported function names in a collapsible block (closes #117, #137). - Added pkgdeps_as_table section to markdown output, listing package dependencies and their imported call counts. - Added Bootstrap-style alerts (alert-success, alert-danger) in HTML output (closes #82). - Added tooltip descriptions to stats summary output (closes #28). - Implemented markdown rendering of the "extra checks" section (closes #44, #108). - Fixed checks_to_markdown scrap-check key name. Dependency data - Added get_re_exports and ncalls column to the package-dependency summary. - Added external_fns data item to the checks object, exposing counts of calls to functions in each imported package. CI and GitHub Actions - Added use_github_action_pkgcheck / use_github_check function for inserting the pkgcheck GHA template into a package (closes #135). - Added branch parameter to use_github_action_pkgcheck so the action targets the correct branch (closes #135). - Added NOT_CRAN environment variable to the GHA template (fixes #134). - Added read_pkg_guide helper for reading the rOpenSci packaging guide. - Removed GitLab mirroring workflow (closes #128). - Added monthly.yaml workflow to send automated monthly check summaries (closes #123). - Added allcontributors integration. - Switched visjs path handling to be compatible with GHA runners (closes #127). - Added note in rendered output when network diagram is generated on GHA (closes #127). Testing and snapshots - Added clean-snapshots.R script to normalise platform-specific paths in snapshot output (closes #111). - All tests now use a local tempdir() as the cache directory, isolating them from the real user cache (closes #113). - Added test-extra-checks and associated snapshots. - Added test-order-checks.R. - Switched to pandoc --wrap=preserve for reproducible HTML snapshot output. - Added goodpractice = FALSE parameter to the main pkgcheck function, allowing tests (and users) to skip the slow goodpractice step. Infrastructure - Replaced ghql dependency with gh for all GitHub API calls (closes #256 prep). - Replaced httr with httr2 for all HTTP requests. - Removed cloc dependency. - Updated Dockerfile: R 4.0 → 4.1, added ubuntugis PPA, pre-installed spatial system libraries, pre-installed arrow, duckdb, sf. - Added add-apt-repository / software-properties-common to Docker image. - Added spaceout pre-commit hook; applied consistent whitespace formatting across all source files. - Updated rappdirs-based cache path to use fs::path_abs. - Added .onUnload to reset options and environment variables set during package load. Changes in version 0.0.2 Package rename and restructure - Renamed the package from an earlier prototype to pkgcheck and updated the object class, all exported function names, and documentation to match (closes #21). - Restructured the main pkgcheck() object: separated info items (git metadata, pkgstats, srr, CI badges, URLs) from checks items (each individually named pkgchk_*). - Split the monolithic format-checks.R into collate-checks.R and individual per-check source files under R/check-*.R and R/info-*.R. - Renamed all collate_* functions to summarise_* for consistency. - Added a generic summarise_check function dispatched per check type. New checks - check-has-citation: verifies a CITATION file exists (closes #9). - check-has-codemeta: verifies a codemeta.json file exists (closes #9). - check-has-contrib: verifies a CONTRIBUTING.md file exists (closes #9, #35). - check-has-vignette: detects presence of at least one built vignette (improved by Maëlle Salmon). - check-scrap: detects unwanted files such as .DS_Store in the git tree (closes #27). - check-pkgname-available: checks that the package name is not already on CRAN. - check-left-assign: reports use of <- vs = for assignment in function bodies. - check-fns-have-exs: reports exported functions lacking @examples tags. - check-on-cran: reports whether the package is already on CRAN. - check-uses-roxygen2: checks that roxygen2 is used for documentation. - check-covr: reports test coverage via covr. Output and print methods - Added print and summary S3 methods for the pkgcheck class; added dedicated output_pkgchk_* functions for each check type, providing consistent screen and markdown rendering. - Added checks_to_markdown function that converts the full pkgcheck result to a GitHub-flavoured Markdown string, including a visjs network diagram and an srr standards section. - Added render_markdown function to render the Markdown string to HTML via rmarkdown. - Implemented symbol_tck / symbol_crs helpers (tick and cross Unicode symbols) used uniformly across all output functions; added fmt parameter for screen vs. markdown formatting. - Added order_checks function to control the display sequence of check items in summary output. - Added list_pkgchecks function (with quiet parameter) to enumerate all currently active checks. - Added extra_check_prints_from_env allowing extra checks supplied via an environment variable to appear in the print output (closes #40). goodpractice integration - Separated goodpractice into its own pkgchk_gp check; divided gp results into four labelled sections (rcmdcheck, cyclocomp, lintr, covr); added lintr section to output (closes #19). - Added get_gp_report (exported) and local caching of gp results in the cache directory. - Extended convert_gp_components to produce Markdown-formatted sub-sections. Statistical software standards (srr) - Integrated the srr package: captured the srr version, copied the srr Markdown report to the static cache directory, and added srr categories to the print and summary output. - Added add_srr_categories_from_report function. - Added separate collate_srr_checks / summarise_srr_checks functions. Caching and background execution - Added pkgcheck_bg for running checks in a background callr process (via callr::r_bg), with checks_running_in_bg to detect concurrent runs. - Added stdout_stderr_cache / logfile_names helpers for routing background-process output to cache files. - Added cache-directory management via .onLoad: auto-creates pkgcheck and static sub-directories under the rappdirs application directory. CI and GitHub Actions - Added ci_badges check: scrapes CI badges from the package README to determine CI provider status (GitHub Actions, Travis, etc.). - Added ci_results_gh function: fetches GitHub Actions workflow run results directly from the GitHub API via gert and gh. - Replaced all git remote shell commands with gert equivalents. - Added use_github_action_pkgcheck stub and pkgdown GitHub Actions workflow. - Added check-other-OS workflow to test on additional platforms. - Added Docker image with full system dependencies (R, ctags, gtags, pandoc, visNetwork, spatial libraries); added serve_api function wrapping a plumber API. API / plumber endpoints (later moved to 'roreviewapi') - Implemented plumber API endpoints: check, goodpractice, srr, log, report, editorcheck; later consolidated into roreviewapi. - Added dl_gh_repo / dl_repo helpers for downloading package source from GitHub. Dependency changes - Added imports: cli, gert, gh, glue, pkgstats, rappdirs, rmarkdown, visNetwork, withr. - Removed cloc; removed plumber-related files; reduced exported fns. Documentation - Added CONTRIBUTING.md (closes #35) and CODE_OF_CONDUCT.md. - Added "Extending Checks" vignette describing how to add new pkgchk_* checks (closes #29, #36). - Added "Installation of ctags" vignette. - Added README sections on checks_to_markdown, the full list of checks, and Docker/API usage. - Added @maelle (Maëlle Salmon) and @assignUser (Jacob Wujciak-Jens) as package authors. Changes in version 0.0.1 - Initial release of the package. - Set up basic package structure: pkgcheck() main function, background-process helper (bg parameter), and pg_report entry point. - Added rappdirs-based cache directory with cache_dir parameter and corresponding environment variable. - Added GitHub Actions workflows (check, push-to-gitlab); configured Travis CI. - Added pkgdown documentation action. - Added codemeta.json.