Changes in version 2.1.5.9000                      

                 Changes in version 2.1.5 (2025-03-06)                  

(2025-03-07)

BUG FIXES

  - gb_sequence_get() now ensures that accessions are returned in same
    order as query (https://github.com/ropensci/restez/issues/64),
    thanks @krlmlr

  - tests no longer use with_mock()
    (https://github.com/ropensci/restez/issues/63), thanks @hadley

  - Fix bug where a very long sequence record crashed db_create() (#60),
    thanks @btupper

                 Changes in version 2.1.4 (2023-10-25)                  

(2023-10-25)

BUG FIXES

  - Fix bug in test due to update to duckdb (#55)

                 Changes in version 2.1.3 (2022-11-11)                  

(2022-11-09)

BUG FIXES

  - Fix error in processing GenBank release notes that arose in GenBank
    release 252 (#47)

                 Changes in version 2.1.2 (2022-09-05)                  

(2022-09-05)

BUG FIXES

  - Fix spelling errors (4c0f9e48fb3e4d3351a4282d121b26f24d4241f1)
  - Fix broken links (fddb4c2508975fe5bf5588da6aae5aca15f82a61)
  - Other minor fixes for submission to CRAN
    (43795b48d6fa4ef4c7485dc0f1675d6a2e4fa574, 325b74ff3193bb94e9062bb6114a30b709324ca8)

                        Changes in version 2.1.1                        

(2022-09-05)

BUG FIXES

  - Fix incorrect warning about max_tries (#45)

                        Changes in version 2.1.0                        

(2022-08-31)

BUG FIXES

  - Fixed bug where restez_status() did not show correct file size (#32)
  - Fixed frequent appearance of "Database is garbage-collected" warning
    (#33)
  - Skip scanning of gzipped file if zgrep is not detected
    (3de4f95985c9e857eba276c323625c5c32461155)

DOCUMENTATION

  - Add "Accession filter" to "Tips and Tricks"
    (1e30498f91b7efd765fb24243df686e10ee16977)
  - Use markdown syntax for roxygen2
    (ded1466af50562b88fa1bd349fdadbc1081495d3)

NEW FEATURES

  - Change use of restez_connect() and restez_disconnect(): they are no
    longer user-facing, and instead get run internally for each instance
    of connecting to the local database. Also, connection to DB is made
    in read-only mode, which should allow for multiple simultaneous
    processes to access the DB (#33, #35)
  - Add ncbi_acc_get() to enable easier querying of GenBank accession
    numbers (#37, #43)
  - Add max_tries argument to db_download() to automatically re-try
    download in the event of a drop in internet connectivity (#36, #42)
  - Add dnabin argument to gb_sequence_get() to return sequences in ape
    DNAbin format (#38, #44)

                        Changes in version 2.0.0                        

(2022-07-07)

BUG FIXES

  - Migrate to duckdb (#18, #26)

DOCUMENTATION

  - Update to correct github repo (#28)

NEW FEATURES

  - Add option to connect to database in read-only mode
    (91b85f6dd24153c16be1cf74a712e5349e31c679)

OTHER

  - Switch CI from travis to github actions
    (9cc52e888accf489310b604b2636ffbfd0acecd7)

                        Changes in version 1.1.0                        

(2022-06-03)

BUG FIXES

  - Fix bug where single extremely long sequence caused db_create() to
    die (#14)

NEW FEATURES

  - Add ability to filter database by accession number upon creation
    (#25)

OTHER

  - Change maintainer to Joel Nitta

                        Changes in version 1.0.1                        

(2019-01-07)

BUG FIXES

  - Check internet connection in mainland China

                 Changes in version 1.0.0 (2018-11-26)                  

(2018-11-27)

OTHER

  - Post-review version of restez released.
  - Download and query parts of GenBank from within R