Package: DataSpaceR 1.0.0

Jason Taylor

DataSpaceR: Interface to 'the CAVD DataSpace'

Provides a convenient API interface to access immunological data within 'the CAVD DataSpace'(<https://dataspace.cavd.org>), a data sharing and discovery tool that facilitates exploration of HIV immunological data from pre-clinical and clinical HIV vaccine studies.

Authors:Ju Yeong Kim [aut], Sean Hughes [rev], Jason Taylor [aut, cre], Helen Miller [aut], Kellie MacPhee [rev], CAVD DataSpace [cph]

DataSpaceR_1.0.0.tar.gz
DataSpaceR_1.0.0.zip(r-4.7)DataSpaceR_1.0.0.zip(r-4.6)DataSpaceR_1.0.0.zip(r-4.5)
DataSpaceR_1.0.0.tgz(r-4.6-any)DataSpaceR_1.0.0.tgz(r-4.5-any)
DataSpaceR_1.0.0.tar.gz(r-4.7-any)DataSpaceR_1.0.0.tar.gz(r-4.6-any)
DataSpaceR_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DataSpaceR/json (API)

# Install 'DataSpaceR' in R:
install.packages('DataSpaceR', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #261

Bug tracker:https://github.com/ropensci/dataspacer/issues

Pkgdown/docs site:https://docs.ropensci.org

On CRAN:

Conda:

cavd-dataspace

6.48 score 5 stars 48 scripts 355 downloads 4 exports 13 dependencies

Last updated from:2928465014 (on main). Checks:10 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK128
pkgdown docsOK197
source / vignettesOK192
linux-release-x86_64OK142
macos-release-arm64OK94
macos-oldrel-arm64OK95
windows-develOK77
windows-releaseOK73
windows-oldrelOK83
wasm-releaseOK137

Exports:checkNetrcconnectDSgetNetrcPathwriteNetrc

Dependencies:askpassassertthatcurldata.tabledigesthttrjsonlitemimeopensslR6RcppRlabkeysys

Accessing DastaSpace DAASH
Purpose | Data Sources and Processing for DAASH | Accessing DAASH via a DataSpaceConnection object | Accessing DataSpace neutralizing antibody assay data from DAASH
Rendered fromAccessing_CDS_DAASH.Rmdusingknitr::rmarkdown

Last update: 2026-06-23
Started: 2026-06-23

Accessing Monoclonal Antibody Data
Workflow overview | View metadata concerning the mAb object
Rendered fromMonoconal_Antibody_Data.Rmdusingknitr::rmarkdown

Last update: 2026-06-23
Started: 2020-01-06

Accessing Publication Data
Browsing publications in DataSpace | Downloading Publication Data
Rendered fromPublication_Data.Rmdusingknitr::rmarkdown

Last update: 2026-06-23
Started: 2020-05-04

Introduction to DataSpaceR
DataSpaceR Version 1.0 Update | Configuration | Creating a netrc file with writeNetrc | Manually creating a netrc file | About DataSpaceR objects | Initiate a connection | Loading Assay Datasets | Connect to a saved group | Accessing Virus Metadata | Accessing MAb and MAb Donor Data | Accessing DataSpace DAASH | Accessing Publication Data | Accessing Help Files
Rendered fromDataSpaceR.Rmdusingknitr::rmarkdown

Last update: 2026-06-23
Started: 2019-12-20

Using The Virus Name Mapping Tables
Purpose | Our sources | Usage caveats | Tutorial for using mapping tables | Checking the dataset for a virus name synonym | Getting standard names from virus_metadata_all | Additional notes for users processing data from the CAVIMC Neutralizing Antibody Cores | Check the harvest date | Check with the lab
Rendered fromVirus_Name_Mapping_Tables.Rmdusingknitr::rmarkdown

Last update: 2026-06-23
Started: 2022-06-21