Package: EndoMineR 2.0.1.9000
EndoMineR: Functions to mine endoscopic and associated pathology datasets
This script comprises the functions that are used to clean up endoscopic reports and pathology reports as well as many of the scripts used for analysis. The scripts assume the endoscopy and histopathology data set is merged already but it can also be used of course with the unmerged datasets.
Authors:
EndoMineR_2.0.1.9000.tar.gz
EndoMineR_2.0.1.9000.zip(r-4.5)EndoMineR_2.0.1.9000.zip(r-4.4)EndoMineR_2.0.1.9000.zip(r-4.3)
EndoMineR_2.0.1.9000.tgz(r-4.4-any)EndoMineR_2.0.1.9000.tgz(r-4.3-any)
EndoMineR_2.0.1.9000.tar.gz(r-4.5-noble)EndoMineR_2.0.1.9000.tar.gz(r-4.4-noble)
EndoMineR_2.0.1.9000.tgz(r-4.4-emscripten)EndoMineR_2.0.1.9000.tgz(r-4.3-emscripten)
|EndoMineR.html✨
EndoMineR/json (API)
NEWS
# Install 'EndoMineR' in R: |
install.packages('EndoMineR', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/endominer/issues
- ColonFinal - Fake Lower GI Endoscopy Set
- Myendo - Fake Endoscopies
- Mypath - Fake Pathology report
- PathDataFrameFinal - Fake Upper GI Pathology Set
- PathDataFrameFinalColon - Fake Lower GI Pathology Set
- TheOGDReportFinal - Fake Upper GI Endoscopy Set
- vColon - Fake Lower GI Endoscopy Set including Pathology
endoscopygastroenterologypeer-reviewedsemi-structured-datatext-mining
Last updated 1 months agofrom:2b3603a276 (on master). Checks:ERROR: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | FAIL | Oct 02 2024 |
R-4.5-win | NOTE | Oct 02 2024 |
R-4.5-linux | NOTE | Oct 02 2024 |
R-4.4-win | NOTE | Oct 02 2024 |
R-4.4-mac | NOTE | Oct 02 2024 |
R-4.3-win | NOTE | Oct 02 2024 |
R-4.3-mac | NOTE | Oct 02 2024 |
Exports:Barretts_FUTypeBarretts_PathStageBarretts_PragueScoreBarrettsAllBarrettsBxQualBarrettsParisEMRBiopsyIndexCategoricalByEndoscopistColumnCleanUpdev_ExtrapolateOPCS4PrepDictionaryInPlaceReplaceEndoBasicGraphEndomerge2EndoPasteEndoscEndoscopistEndoscInstrumentEndoscMedsEndoscopyEventEntityPairs_OneSentenceEntityPairs_TwoSentenceEosinophilicsEventListExtractorExtrapolatefromDictionaryGISymptomsListGRS_Type_Assess_By_UnitHistolBxSizeHistolNumbOfBxHistolTypeHistolTypeAndSiteHowManyOverTimeIBD_ScoresListLookupLocationListLocationListLowerLocationListUniversalLocationListUpperMetricByEndoscopistMyImgLibraryNegativeRemoveNegativeRemoveWrapperPatientFlow_CircosPlotsPatientFlowIndividualRFACathsanityscale_colour_Publicationscale_fill_PublicationSurveilFirstTestSurveilLastTestSurveilTimeByRowSurveySankeytextPreptheme_PublicationTimeToStatusWordsToNumbers
Dependencies:askpassbackportsbase64encBHbitbit64blobbroombslibcachemcallrcellrangercheckmateclicliprclustercolorspaceconflictedcpp11crayoncurldata.tableDBIdbplyrDiagrammeRdigestdplyrdtplyrevaluatefansifarverfastmapfontawesomeforcatsforeignFormulafsfuzzyjoingarglegenericsgeosphereggplot2ggthemesgluegoogledrivegooglesheets4gridExtragtablehavenherehighrHmischmshtmlTablehtmltoolshtmlwidgetshttridsigraphisobandjquerylibjsonliteknitrlabelinglatticelifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemodelrmunsellnlmeNLPnnetopensslpanderpillarpkgconfigprettyunitsprocessxprogresspspurrrR6raggrappdirsRColorBrewerRcppreadrreadxlrematchrematch2reprexrlangrmarkdownrpartrprojrootrstudioapirvestsassscalesselectrslamspstringdiststringistringrsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetinytextmtzdbutf8uuidvctrsviridisviridisLitevisNetworkvroomwithrxfunxml2yaml
Analysis
Rendered fromAnalysis.Rmd
usingknitr::rmarkdown
on Oct 02 2024.Last update: 2019-10-03
Started: 2017-12-22
Barrett's Oesophagus
Rendered fromBarretts.Rmd
usingknitr::rmarkdown
on Oct 02 2024.Last update: 2019-10-03
Started: 2017-12-22
Data
Rendered fromData.Rmd
usingknitr::rmarkdown
on Oct 02 2024.Last update: 2019-10-03
Started: 2018-03-01
EndoMineR
Rendered fromEndoMineR.Rmd
usingknitr::rmarkdown
on Oct 02 2024.Last update: 2021-01-30
Started: 2017-09-08
Polyps
Rendered fromPolyps.Rmd
usingknitr::rmarkdown
on Oct 02 2024.Last update: 2019-10-03
Started: 2019-04-26