Package: SymbiotaR2 0.0-1

Austin Koontz

SymbiotaR2: Downloading Data from Symbiota2 Portals into R

Download data from Symbiota2 portals using Symbiota's API. Covers the Checklists, Collections, Crowdsource, Exsiccati, Glossary, ImageProcessor, Key, Media, Occurrence, Reference, Taxa, Traits, and UserRoles API families. Each Symbiota2 portal owner can load their own plugins (and modified code), and so this package may not cover every possible API endpoint from a given Symbiota2 instance.

Authors:Austin Koontz [aut, cre], William D. Pearse [aut], Ben Bond-Lamberty [rev], Scott Chamberlain [rev]

SymbiotaR2_0.0-1.tar.gz
SymbiotaR2_0.0-1.zip(r-4.7)SymbiotaR2_0.0-1.zip(r-4.6)SymbiotaR2_0.0-1.zip(r-4.5)
SymbiotaR2_0.0-1.tgz(r-4.6-any)SymbiotaR2_0.0-1.tgz(r-4.5-any)
SymbiotaR2_0.0-1.tar.gz(r-4.7-any)SymbiotaR2_0.0-1.tar.gz(r-4.6-any)
SymbiotaR2_0.0-1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SymbiotaR2/json (API)

# Install 'SymbiotaR2' in R:

install.packages('SymbiotaR2', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #373

Bug tracker:https://github.com/pearselab/symbiotar2/issues

On CRAN:

database library specimen-records symbiota symbiota2 symbiota2-portal

3.30 score 2 stars 7 scripts 54 exports 10 dependencies

Last updated from:f0231b5106 (on master). Checks:7 NOTE, 3 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	133
pkgdown docs	OK	144
source / vignettes	OK	147
linux-release-x86_64	NOTE	171
macos-release-arm64	NOTE	141
macos-oldrel-arm64	NOTE	79
windows-devel	NOTE	90
windows-release	NOTE	81
windows-oldrel	NOTE	72
wasm-release	OK	101

Exports:AccessStats Associations Authorities Categories Central CharacterHeading Characters CharacterStateImages CharacterStates ChecklistProjects Checklists Collections Comments Configurations Coordinates DatasetLink Datasets DescriptionBlock DescriptionDeletions Determinations Duplicates EditLocks Edits Exchange FullText Glossary GuidDeterminations GuidOccurrences Institutions Loans LookupChronostratigraphy LookupCounties LookupCountries LookupLanguages LookupReferenceTypes LookupStateProvinces Numbers Occurrences Projects Queue RawLabels SchemaVersion Stats SymbiotaR2_setup Synonymy TagKey Taxa TaxaLink TermLink Titles Traits UploadMappings UploadParameters Verification

Dependencies:askpass curl fs httr jsonlite mime openssl R6 rjson sys

Downloading data from Symbiota2 portals in R

Rendered fromSymbiotaR2-intro.Rmdusingknitr::rmarkdown

Last update: 2020-10-08
Started: 2019-11-27

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Retrieves Checklists resources from the Symbiota2 server	ChecklistProjects Checklists Coordinates TaxaLink
Retrieves Collection resources from the Symbiota2 server	Categories Collection Collections Institutions Stats
Retrieves Crowdsource resources from the Symbiota2 server	Central Crowdsource Queue
Retrieves Exsiccati resources from the Symbiota2 server	Exsiccati Numbers Titles
Retrieves Glossary resources from the Symbiota2 server	Glossary TermLink
Retrieves ImageProcessor resources from the Symbiota2 server	ImagePRocessor Projects RawLabels
Retrieves Key resources from the Symbiota2 server	CharacterHeading Characters CharacterStateImages CharacterStates DescriptionDeletions Key
Retrieves Media resources from the Symbiota2 server	Media TagKey
Retrieves Miscellaneous resources from the Symbiota2 server	Configurations LookupLanguages Miscellaneous SchemaVersion
Retrieves Occurrence resources from the Symbiota2 server	AccessStats Associations Comments DatasetLink Datasets Determinations Duplicates EditLocks Edits Exchange FullText GuidDeterminations GuidOccurrences Loans LookupChronostratigraphy LookupCounties LookupCountries LookupStateProvinces Occurrences UploadMappings UploadParameters Verification
Retrieves Reference resources from the Symbiota2 server	LookupReferenceTypes Reference
Downloading data from Symbiota2 portals into R	SymbiotaR2-package package-SymbiotaR2 SymbiotaR2
Set default URL for Symbiota2 portal download	SymbiotaR2_setup
Retrieves Taxa resources from the Symbiota2 server	Authorities DescriptionBlock Synonymy Taxa
Retrieves Traits resources from the Symbiota2 server	Traits