Package: brranching 0.7.1
Luna L Sanchez Reyes
brranching: Fetch 'Phylogenies' from Many Sources
Includes methods for fetching 'phylogenies' from a variety of sources, including the 'Phylomatic' web service (<http://phylodiversity.net/phylomatic/>), and 'Phylocom' (<https://github.com/phylocom/phylocom/>).
Authors:
brranching_0.7.1.tar.gz
brranching_0.7.1.zip(r-4.5)brranching_0.7.1.zip(r-4.4)brranching_0.7.1.zip(r-4.3)
brranching_0.7.1.tgz(r-4.4-any)brranching_0.7.1.tgz(r-4.3-any)
brranching_0.7.1.tar.gz(r-4.5-noble)brranching_0.7.1.tar.gz(r-4.4-noble)
brranching_0.7.1.tgz(r-4.4-emscripten)brranching_0.7.1.tgz(r-4.3-emscripten)
brranching.pdf |brranching.html✨
brranching/json (API)
NEWS
| # Install 'brranching' in R: |
| install.packages('brranching', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/brranching/issues
Pkgdown:https://docs.ropensci.org
- phylomatic_trees - Phylogenies to use with phylomatic
- tpl - Lookup-table for family, genus, and species names for ThePlantList gymnosperms
phylogenytreephylomaticmolecularplantsphylogenies
Last updated 2 years agofrom:efd089fd82 (on master). Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 27 2024 |
| R-4.5-win | OK | Nov 27 2024 |
| R-4.5-linux | OK | Nov 27 2024 |
| R-4.4-win | OK | Nov 27 2024 |
| R-4.4-mac | OK | Nov 27 2024 |
| R-4.3-win | OK | Nov 27 2024 |
| R-4.3-mac | OK | Nov 27 2024 |
Exports:phylomaticphylomatic_localphylomatic_namesrbladj
Dependencies:apeaskpassassertthatbackportsbase64encbitbit64boldbslibcachemcheckmateclicliprclusterclusterGenerationcodacodetoolscolorspacecombinatconditionzcpp11crayoncrulcurldata.tableDEoptimdigestdoParalleldplyrevaluateexpmfansifarverfastmapfastmatchfontawesomeforeachforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrmapsMASSMatrixmemoisemgcvmimemnormtmunsellnatservnlmennetnumDerivopenssloptimParallelpbapplyphangornphylocomrphytoolspillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppreadrrentrezrexritisrlangrmarkdownrnclrotlrpartrredlistrstudioapisassscalesscatterplot3dsolriumstringistringrsystaxizetibbletidyselecttinytextriebeardtzdburltoolsutf8uuidvctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| brranching | brranching-package brranching |
| Query Phylomatic for a phylogenetic tree. | phylomatic |
| Use Phylomatic locally - ideal for large queries | phylomatic_local |
| Phylomatic names | phylomatic_names |
| Phylogenies to use with phylomatic | phylomatic_trees |
| Run Phylocom's bladj from R | rbladj |
| Lookup-table for family, genus, and species names for ThePlantList gymnosperms | tpl |
