Package: brranching 0.7.1
Luna L Sanchez Reyes
brranching: Fetch 'Phylogenies' from Many Sources
Includes methods for fetching 'phylogenies' from a variety of sources, including the 'Phylomatic' web service (<http://phylodiversity.net/phylomatic/>), and 'Phylocom' (<https://github.com/phylocom/phylocom/>).
Authors:
brranching_0.7.1.tar.gz
brranching_0.7.1.zip(r-4.7-any)brranching_0.7.1.zip(r-4.6-any)brranching_0.7.1.zip(r-4.5-any)
brranching_0.7.1.tgz(r-4.6-any)brranching_0.7.1.tgz(r-4.5-any)
brranching_0.7.1.tar.gz(r-4.7-any)brranching_0.7.1.tar.gz(r-4.6-any)
brranching_0.7.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
brranching/json (API)
| # Install 'brranching' in R: |
| install.packages('brranching', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/brranching/issues
Pkgdown/docs site:https://docs.ropensci.org
- phylomatic_trees - Phylogenies to use with phylomatic
- tpl - Lookup-table for family, genus, and species names for ThePlantList gymnosperms
phylogenytreephylomaticmolecularplantsphylogenies
Last updated from:efd089fd82 (on master). Checks:10 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 161 | ||
| pkgdown docs | OK | 176 | ||
| source / vignettes | OK | 268 | ||
| linux-release | OK | 160 | ||
| macos-release | OK | 118 | ||
| macos-oldrel | OK | 125 | ||
| windows-devel | OK | 96 | ||
| windows-release | OK | 96 | ||
| windows-oldrel | OK | 90 | ||
| wasm-release | OK | 115 |
Exports:phylomaticphylomatic_localphylomatic_namesrbladj
Dependencies:apeaskpasscliclusterGenerationcodacodetoolscombinatconditionzcpp11crayoncrulcurldata.tableDEoptimdigestdoParalleldplyrexpmfastmatchforeachgenericsgluehmshttpcodehttrigraphiteratorsjsonlitelatticelifecyclemagrittrmapsMASSMatrixmimemnormtnatservnlmenumDerivopenssloptimParallelphangornphylocomrphytoolspillarpkgconfigplyrprettyunitsprogressquadprogR6Rcpprentrezritisrlangrnclrotlrredlistscatterplot3dsolriumstringisystaxizetibbletidyselecttriebeardurltoolsutf8uuidvctrsWikipediRwikitaxawithrworrmsXMLxml2zoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| brranching | brranching-package brranching |
| Query Phylomatic for a phylogenetic tree. | phylomatic |
| Use Phylomatic locally - ideal for large queries | phylomatic_local |
| Phylomatic names | phylomatic_names |
| Phylogenies to use with phylomatic | phylomatic_trees |
| Run Phylocom's bladj from R | rbladj |
| Lookup-table for family, genus, and species names for ThePlantList gymnosperms | tpl |