Package: dbparser 2.0.3

Mohammed Ali

dbparser: Drugs Databases Parser

This tool is for parsing public drug databases such as 'DrugBank' XML database <https://go.drugbank.com/>. The parsed data are then returned in a proper 'R' object called 'dvobject'.

Authors:Mohammed Ali [aut, cre], Ali Ezzat [aut], Hao Zhu [rev], Emma Mendelsohn [rev]

dbparser_2.0.3.tar.gz
dbparser_2.0.3.zip(r-4.5)dbparser_2.0.3.zip(r-4.4)dbparser_2.0.3.zip(r-4.3)
dbparser_2.0.3.tgz(r-4.4-any)dbparser_2.0.3.tgz(r-4.3-any)
dbparser_2.0.3.tar.gz(r-4.5-noble)dbparser_2.0.3.tar.gz(r-4.4-noble)
dbparser_2.0.3.tgz(r-4.4-emscripten)dbparser_2.0.3.tgz(r-4.3-emscripten)
dbparser.pdf |dbparser.html✨
dbparser/json (API)
NEWS

# Install 'dbparser' in R:

install.packages('dbparser', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/dbparser/issues

On CRAN:

5 exports 59 stars 3.75 score 22 dependencies 4 mentions 639 downloads

Last updated 9 days agofrom:39d9a07850 (on master)

Exports:cett_nodes_options drug_node_options parseDrugBank references_node_options show_dvobject_metadata

Dependencies:cli crayon dplyr fansi generics glue hms lifecycle magrittr pillar pkgconfig prettyunits progress purrr R6 rlang tibble tidyselect utf8 vctrs withr XML

DrugBank Database XML Parser

Mohammed Ali

Rendered fromdbparser.Rmdusingknitr::rmarkdownon Jul 18 2024.

Last update: 2024-02-16
Started: 2018-10-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
returns carriers, enzymes,targets and transporters node valid options.	cett_nodes_options
returns drug node valid options.	drug_node_options
parseDrugBank	parseDrugBank
returns references node valid options.	references_node_options
init_dvobject Returns data.frame with two columns (key, value) of dvobject attributes	show_dvobject_metadata