Package: dbparser 2.2.1.9000
Mohammed Ali
dbparser: Drugs Databases Parser
This tool is for parsing public drug databases such as 'DrugBank' XML database <https://go.drugbank.com/>. The parsed data are then returned in a proper 'R' object called 'dvobject'.
Authors:
dbparser_2.2.1.9000.tar.gz
dbparser_2.2.1.9000.zip(r-4.7)dbparser_2.2.1.9000.zip(r-4.6)dbparser_2.2.1.9000.zip(r-4.5)
dbparser_2.2.1.9000.tgz(r-4.6-any)dbparser_2.2.1.9000.tgz(r-4.5-any)
dbparser_2.2.1.9000.tar.gz(r-4.7-any)dbparser_2.2.1.9000.tar.gz(r-4.6-any)
dbparser_2.2.1.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
dbparser/json (API)
NEWS
| # Install 'dbparser' in R: |
| install.packages('dbparser', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org')) |
Reviews:rOpenSci Software Review #347
Bug tracker:https://github.com/ropensci/dbparser/issues
Pkgdown/docs site:https://docs.ropensci.org
Last updated from:06b711ee84 (on cran). Checks:10 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 145 | ||
| pkgdown docs | OK | 195 | ||
| source / vignettes | OK | 205 | ||
| linux-release-x86_64 | OK | 146 | ||
| macos-release-arm64 | OK | 122 | ||
| macos-oldrel-arm64 | OK | 106 | ||
| windows-devel | OK | 102 | ||
| windows-release | OK | 114 | ||
| windows-oldrel | OK | 97 | ||
| wasm-release | OK | 115 |
Exports:add_database_infocett_nodes_optionsdrug_node_optionsmerge_drugbank_onsidesmerge_drugbank_twosidesparseDrugBankparseOnSIDESparseTWOSIDESreferences_node_optionsshow_dvobject_metadatasubset_drugbank_dvobjectsubset_onsides_dvobject
Dependencies:clicrayondata.tabledplyrgenericsgluehmslifecyclemagrittrpillarpkgconfigprettyunitsprogresspurrrR6rlangtibbletidyselectutf8vctrswithrXML
Integrated Pharmacovigilance: Linking DrugBank, OnSIDES, and TWOSIDES
Rendered fromdrugbank_nside.Rmdusingknitr::rmarkdownon May 15 2026.Last update: 2025-12-26
Started: 2025-12-09
Introducing dbparser 2.2.0
Rendered fromdbparser_2_2.Rmdusingknitr::rmarkdownon May 15 2026.Last update: 2025-12-27
Started: 2025-12-27
Unlocking DrugBank: Parsing and Visualizing Mechanistic Data
Rendered fromdbparser.Rmdusingknitr::rmarkdownon May 15 2026.Last update: 2026-01-08
Started: 2018-10-04
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| add_database_info Assign passed databases db metadata to passed dvobject | add_database_info |
| returns carriers, enzymes,targets and transporters node valid options. | cett_nodes_options |
| returns drug node valid options. | drug_node_options |
| Merge DrugBank and OnSIDES Database Objects | merge_drugbank_onsides |
| Merge a DrugBank dvobject with a TWOSIDES dvobject | merge_drugbank_twosides |
| parseDrugBank | parseDrugBank |
| Parse the OnSIDES Core Relational Database | parseOnSIDES |
| Parse the TWOSIDES Drug-Drug Interaction Database | parseTWOSIDES |
| returns references node valid options. | references_node_options |
| Display dvobject Metadata | show_dvobject_metadata |
| Subset a DrugBank dvobject by a vector of DrugBank IDs | subset_drugbank_dvobject |
| Subset an OnSIDES dvobject by a vector of RxNorm Ingredient IDs (Schema-Aware) | subset_onsides_dvobject |
