Package: dendroNetwork 0.5.4
Ronald Visser
dendroNetwork: Create Networks of Dendrochronological Series using Pairwise Similarity
Creating dendrochronological networks based on the similarity between tree-ring series or chronologies. The package includes various functions to compare tree-ring curves building upon the 'dplR' package. The networks can be used to visualise and understand the relations between tree-ring curves. These networks are also very useful to estimate the provenance of wood as described in Visser (2021) <doi:10.5334/jcaa.79> or wood-use within a structure/context/site as described in Visser and Vorst (2022) <doi:10.1163/27723194-bja10014>.
Authors:
dendroNetwork_0.5.4.tar.gz
dendroNetwork_0.5.4.zip(r-4.5)dendroNetwork_0.5.4.zip(r-4.4)dendroNetwork_0.5.4.zip(r-4.3)
dendroNetwork_0.5.4.tgz(r-4.4-any)dendroNetwork_0.5.4.tgz(r-4.3-any)
dendroNetwork_0.5.4.tar.gz(r-4.5-noble)dendroNetwork_0.5.4.tar.gz(r-4.4-noble)
dendroNetwork_0.5.4.tgz(r-4.4-emscripten)dendroNetwork_0.5.4.tgz(r-4.3-emscripten)
dendroNetwork.pdf |dendroNetwork.html✨
dendroNetwork/json (API)
NEWS
| # Install 'dendroNetwork' in R: |
| install.packages('dendroNetwork', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/dendronetwork/issues
- RING_Visser_2021 - Roman tree-ring site chronologies
- hol_rom - Roman tree-ring site chronologies from Hollstein
archaeologydendrochronologydendroprovenancenetwork-analysistree-rings
Last updated 3 months agofrom:4543d3b1b7 (on main)
Exports:clique_community_namesclique_community_names_parcor_mat_overlapcyto_clean_stylescyto_create_cpm_stylecyto_create_gn_stylecyto_create_graphdendro_networkfind_all_cpm_comgn_namessim_tablet_valuewuchswerte
Dependencies:askpassbackportsbase64encbase64urlBiocGenericsbitopsbootcaToolsclicodetoolscpp11crayoncurldigestdoParalleldplRdplyrevaluatefansifastmapforeachfsgenericsgluegplotsgraphgtoolshtmltoolshttrigraphIRdisplayIRkerneliteratorsjsonliteKernSmoothlatticelifecyclemagrittrMASSMatrixmatrixStatsmimeopensslpbdZMQpillarpkgconfigplyrpngpurrrR.methodsS3R.ooR.utilsR6RColorBrewerRcppRCurlRCy3reprreshape2RJSONIOrlangsignalstringistringrsystibbletidyrtidyselectutf8uuidvctrswithrXML
Cytoscape visualization
Rendered fromcytoscape.Rmdusingknitr::rmarkdownon Jul 08 2024.Last update: 2024-04-27
Started: 2024-02-20
dendrochronological data
Rendered fromdendrochronological_data.Rmdusingknitr::rmarkdownon Jul 08 2024.Last update: 2024-04-05
Started: 2024-04-05
dendroNetwork: how to use it
Rendered fromdendroNetwork.Rmdusingknitr::rmarkdownon Jul 08 2024.Last update: 2024-04-05
Started: 2024-03-29
Finding communities in large datasets
Rendered fromlarge_datasets_communities.Rmdusingknitr::rmarkdownon Jul 08 2024.Last update: 2024-04-12
Started: 2024-03-29
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Clique Percolation Method (with node names) | clique_community_names |
| Clique Percolation Method (with node names) | clique_community_names_par |
| Pearson correlation matrix | cor_mat_overlap |
| Cleaning nearly all styles in cytoscape session and import simple styles | cyto_clean_styles |
| Create CPM style in Cytoscape | cyto_create_cpm_style |
| Create Girvan-Newman communities style in Cytoscape | cyto_create_gn_style |
| Create networks in Cytoscape | cyto_create_graph |
| Create dendrochronologial networks | dendro_network |
| Finding all CPM communities in a network/graph | find_all_cpm_com |
| Community detection using the Girvan-Newman algorithm | gn_names |
| Roman tree-ring site chronologies from Hollstein | hol_rom |
| Roman tree-ring site chronologies | RING_Visser_2021 |
| Similarity table of tree-ring curves for the creation of a network | sim_table |
| Students' t value | t_value |
| Wuchswerte (Hollstein 1980) | wuchswerte |
