Package: gigs 0.5.2.9000

Simon R Parker

gigs: Assess Fetal, Newborn, and Child Growth with International Standards

Convert between anthropometric measures and z-scores/centiles in multiple growth standards, and classify fetal, newborn, and child growth accordingly. With a simple interface to growth standards from the World Health Organisation and International Fetal and Newborn Growth Consortium for the 21st Century, gigs makes growth assessment easy and reproducible for clinicians, researchers and policy-makers.

Authors:Simon R Parker [aut, cre], Linda Vesel [dtc, ctb], Eric O Ohuma [dtc, ctb], Chitra Saraswati [rev], Victor Ordu [rev], Bill & Melinda Gates Foundation [fnd], London School of Hygiene & Tropical Medicine [cph]

gigs_0.5.2.9000.tar.gz
gigs_0.5.2.9000.zip(r-4.7)gigs_0.5.2.9000.zip(r-4.6)gigs_0.5.2.9000.zip(r-4.5)
gigs_0.5.2.9000.tgz(r-4.6-any)gigs_0.5.2.9000.tgz(r-4.5-any)
gigs_0.5.2.9000.tar.gz(r-4.7-any)gigs_0.5.2.9000.tar.gz(r-4.6-any)
gigs_0.5.2.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gigs/json (API)

# Install 'gigs' in R:

install.packages('gigs', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #626

Bug tracker:https://github.com/ropensci/gigs/issues

Pkgdown/docs site:https://docs.ropensci.org

Datasets:

ig_fet - INTERGROWTH-21st Fetal Standards growth curve data
ig_nbs - INTERGROWTH-21st Newborn Size Standards (including very preterm) growth curve data
ig_nbs_coeffs - INTERGROWTH-21st Newborn Size Standards GAMLSS coefficients
ig_nbs_ext - Extended INTERGROWTH-21st Newborn Size Standards (including very preterm) growth curve data
ig_nbs_ext_coeffs - Extended INTERGROWTH-21st Newborn Size Standards GAMLSS coefficients
ig_png - INTERGROWTH-21st Postnatal Growth Standards growth curve data
life6mo - Data extract from the Low birthweight Infant Feeding Exploration (LIFE) study
who_gs - WHO Child Growth Standards growth curve data
who_gs_coeffs - WHO Child Growth Standards LMS coefficients

On CRAN:

anthropometry growth-standards intergrowth who

3.90 score 10 stars 16 scripts 34 exports 9 dependencies

Last updated from:ef38f81d36 (on main). Checks:10 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	156
pkgdown docs	OK	329
source / vignettes	OK	200
linux-release-x86_64	OK	160
macos-release-arm64	OK	103
macos-oldrel-arm64	OK	97
windows-devel	OK	116
windows-release	OK	110
windows-oldrel	OK	106
wasm-release	OK	155

Exports:.gigs_options categorise_headsize categorise_sfga categorise_stunting categorise_svn categorise_wasting categorise_wfa centile2value classify_growth classify_headsize classify_sfga classify_stunting classify_svn classify_wasting classify_wfa compute_headsize compute_sfga compute_stunting compute_svn compute_wasting compute_wfa gigs_hcaz gigs_input_options_set gigs_lhaz gigs_option_get gigs_option_set gigs_waz gigs_wlz ig_fet_estimate_fetal_weight ig_fet_estimate_ga report_units value2centile value2zscore zscore2value

Dependencies:backports checkmate cli gamlss.dist glue lifecycle MASS rlang vctrs

Introduction to gigs

Rendered fromgigs.Rmdusingknitr::rmarkdown

Last update: 2024-11-18
Started: 2023-04-13

Help page	Topics
Package-level gigs options	.gigs_options
Categorise head circumference-for-age z-scores into head circumference-for-age strata	categorise_headsize
Categorise birthweight centiles into size-for-gestational age strata	categorise_sfga
Categorise length/height-for-age z-scores into stunting strata	categorise_stunting
Categorise birthweight centiles and gestational ages into small vulnerable newborn strata	categorise_svn
Categorise weight-for-length/height z-scores into wasting strata	categorise_wasting
Categorise weight-for-age z-scores into weight-for-age strata	categorise_wfa
Classify multiple growth indicators at the same time using GIGS-recommended growth standards	classify_growth
Classify head size in 'data.frame'-like objects with GIGS-recommended growth standards	classify_headsize
Classify size-for-gestational age in 'data.frame'-like objects with the INTERGROWTH-21st weight-for-gestational age standard	classify_sfga
Classify stunting in 'data.frame'-like objects with GIGS-recommended growth standards	classify_stunting
Classify small vulnerable newborns in 'data.frame'-like objects with the INTERGROWTH-21st weight-for-gestational age standard	classify_svn
Classify wasting in 'data.frame'-like objects with GIGS-recommended growth standards	classify_wasting
Classify weight-for-age in 'data.frame'-like objects with GIGS-recommended growth standards	classify_wfa
Get head size categories using multiple vectors and GIGS-recommended growth standards	compute_headsize
Get size-for-gestational age categories using multiple vectors and the INTERGROWTH-21st weight-for-gestational age standard	compute_sfga
Get stunting categories using multiple vectors and GIGS-recommended growth standards	compute_stunting
Get small vulnerable newborn categories using multiple vectors and the INTERGROWTH-21st weight-for-gestational age standard	compute_svn
Get wasting categories using multiple vectors and GIGS-recommended growth standards	compute_wasting
Get weight-for-age categories using multiple vectors and GIGS-recommended growth standards	compute_wfa
Get and set gigs package-level options	gigs_input_options_set gigs_options gigs_option_get gigs_option_set
Calculate z-scores for anthropometric measures according to GIGS guidance	gigs_hcaz gigs_lhaz gigs_waz gigs_wlz
INTERGROWTH-21st Fetal Standards growth curve data	ig_fet
Estimate fetal weight in grams using the INTERGROWTH-21st predictive equation	ig_fet_estimate_fetal_weight
Estimate gestational age using INTERGROWTH-21st predictive equations	ig_fet_estimate_ga
INTERGROWTH-21st Newborn Size Standards (including very preterm) growth curve data	ig_nbs
INTERGROWTH-21st Newborn Size Standards GAMLSS coefficients	ig_nbs_coeffs
Extended INTERGROWTH-21st Newborn Size Standards (including very preterm) growth curve data	ig_nbs_ext
Extended INTERGROWTH-21st Newborn Size Standards GAMLSS coefficients	ig_nbs_ext_coeffs
INTERGROWTH-21st Postnatal Growth Standards growth curve data	ig_png
Data extract from the Low birthweight Infant Feeding Exploration (LIFE) study	life6mo
Check required units for a conversion using gigs	report_units
Convert anthropometric measures to z-scores/centiles using international growth standards	value2centile value2zscore
WHO Child Growth Standards growth curve data	who_gs
WHO Child Growth Standards LMS coefficients	who_gs_coeffs
Convert z-scores/centiles to anthropometric measures using international growth standards	centile2value zscore2value

Package: gigs 0.5.2.9000

gigs: Assess Fetal, Newborn, and Child Growth with International Standards

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