Package: occCite 0.5.7

Hannah L. Owens

occCite: Querying and Managing Large Biodiversity Occurrence Datasets

Facilitates the gathering of biodiversity occurrence data from disparate sources. Metadata is managed throughout the process to facilitate reporting and enhanced ability to repeat analyses.

Authors:Hannah L. Owens [aut, cre], Cory Merow [aut], Brian Maitner [aut], Jamie M. Kass [aut], Vijay Barve [aut], Robert P. Guralnick [aut], Damiano Oldoni [rev]

occCite_0.5.7.tar.gz
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occCite_0.5.7.tgz(r-4.4-any)occCite_0.5.7.tgz(r-4.3-any)
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occCite.pdf |occCite.html✨
occCite/json (API)
NEWS

# Install 'occCite' in R:

install.packages('occCite', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/occcite/issues

Datasets:

myOccCiteObject - Results of an occCite search for *Protea cynaroides*

On CRAN:

biodiversity-data biodiversity-informatics biodiversity-standards citations museum-collection-specimens museum-collections museum-metadata

11 exports 21 stars 2.32 score 159 dependencies 477 downloads

Last updated 1 months agofrom:d6ebda89d7 (on main)

Exports:GBIFLogin GBIFLoginManager getBIENpoints getGBIFpoints occCitation occCiteData occCiteMap occQuery prevGBIFdownload studyTaxonList taxonRectification

Dependencies:ape askpass assertthat backports base64enc bib2df BIEN bit bit64 bold bslib cachem checkmate class classInt cli clipr cluster codetools colorspace cpp11 crayon crosstalk crul curl data.table DBI digest doParallel dplyr DT e1071 evaluate extrafont extrafontdb fansi farver fasterize fastmap fastmatch fontawesome foreach foreign Formula fs generics ggplot2 glue gridExtra gtable highr Hmisc hms htmlTable htmltools htmlwidgets httpcode httpuv httr humaniformat igraph isoband iterators jquerylib jsonlite KernSmooth knitr labeling later lattice lazyeval leaflet leaflet.providers lifecycle lubridate magrittr MASS Matrix memoise mgcv mime munsell natserv nlme nnet oai openssl pbapply phangorn pillar pkgconfig plyr png prettyunits progress promises proxy purrr quadprog R6 rappdirs raster ratelimitr RColorBrewer Rcpp RcppArmadillo readr rentrez rex rgbif ritis rlang rmarkdown rncl rotl rpart RPostgreSQL rredlist rstudioapi Rttf2pt1 s2 sass scales sf solrium sp stringi stringr sys taxize terra tibble tidyr tidyselect timechange tinytex triebeard tzdb units urltools utf8 vctrs viridis viridisLite vroom waffle whisker WikidataQueryServiceR WikidataR WikipediR wikitaxa withr wk worrms xfun XML xml2 yaml zoo

Advanced search and citation of occurrences

Hannah L. Owens, Cory Merow, Brian Maitner, Jamie M. Kass, Vijay Barve, Robert Guralnick

Rendered fromb_Advanced.Rmdusingknitr::rmarkdownon Jul 23 2024.

Last update: 2022-03-15
Started: 2022-03-01

Simple search and citation of occurrences

Hannah L. Owens, Cory Merow, Brian Maitner, Jamie M. Kass, Vijay Barve, Robert Guralnick

Rendered froma_Simple.Rmdusingknitr::rmarkdownon Jul 23 2024.

Last update: 2022-03-04
Started: 2022-03-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
GBIFLogin Data Class	GBIFLogin GBIFLogin-class
GBIF Login Manager	GBIFLoginManager
Download occurrence points from BIEN	getBIENpoints
Download occurrences from GBIF	getGBIFpoints
Results of an occCite search for Protea cynaroides	myOccCiteObject
Occurrence Citations	occCitation
occCite Citation Class	occCiteCitation occCiteCitation-class
occCite Data Class	occCiteData occCiteData-class
Generating a map of downloaded points	occCiteMap
Query from Taxon List	occQuery
Plotting summary figures for occCite search results	plot.occCiteData
Download previously-prepared GBIF data sets	prevGBIFdownload
Print occCite citation object	print.occCiteCitation
Study Taxon List	studyTaxonList
Summary for occCite data objects	summary.occCiteData
Taxon Rectification	taxonRectification