Package: phylocomr 0.3.4

Luna Luisa Sanchez Reyes

phylocomr: Interface to 'Phylocom'

Interface to 'Phylocom' (<https://phylodiversity.net/phylocom/>), a library for analysis of 'phylogenetic' community structure and character evolution. Includes low level methods for interacting with the three executables, as well as higher level interfaces for methods like 'aot', 'ecovolve', 'bladj', 'phylomatic', and more.

Authors:Jeroen Ooms [aut], Scott Chamberlain [aut], Cam Webb [cph], David Ackerly [cph], Steven Kembel [cph], Luna Luisa Sanchez Reyes [aut, cre]

phylocomr_0.3.4.tar.gz
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phylocomr.pdf |phylocomr.html
phylocomr/json (API)
NEWS

# Install phylocomr in R:
install.packages('phylocomr', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/phylocomr/issues

On CRAN:

phylogenyphylocomphylodiversitycommunity structurecharacter evolutionspeciescommunity-ecologyecologyevolution

13 exports 14 stars 2.68 score 12 dependencies 6 dependents 341 downloads

Last updated 1 years agofrom:a1937fabaa4d1dfbff7efc11b67ca097f7e9ee75 (via master)

Exports:ecovolveph_aotph_bladjph_comdistph_comdistntph_comstructph_comtraitph_ecovolveph_pdph_phylomaticph_raophylocomphylomatic

Dependencies:clifansigluelifecyclemagrittrpillarpkgconfigrlangsystibbleutf8vctrs

Introduction to the phylocomr package

Rendered fromphylocomr.Rmdusingknitr::rmarkdownon Jun 07 2024.

Last update: 2022-12-02
Started: 2019-07-23

Readme and manuals

Help Manual

Help pageTopics
Phylocom interfacephylocomr-package phylocomr
Executablesecovolve executables phylocom phylomatic
aotph_aot
bladjph_bladj
comdistph_comdist ph_comdistnt
comstructph_comstruct
comtraitph_comtrait
ecovolveph_ecovolve
pd - Faith's index of phylogenetic diversityph_pd
phylomaticph_phylomatic
rao - Rao's quadratic entropyph_rao
Expected inputsphylocomr-inputs