Package: phylocomr 0.3.4

Luna Luisa Sanchez Reyes

phylocomr: Interface to 'Phylocom'

Interface to 'Phylocom' (<https://phylodiversity.net/phylocom/>), a library for analysis of 'phylogenetic' community structure and character evolution. Includes low level methods for interacting with the three executables, as well as higher level interfaces for methods like 'aot', 'ecovolve', 'bladj', 'phylomatic', and more.

Authors:Jeroen Ooms [aut], Scott Chamberlain [aut], Cam Webb [cph], David Ackerly [cph], Steven Kembel [cph], Luna Luisa Sanchez Reyes [aut, cre]

phylocomr_0.3.4.tar.gz
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phylocomr.pdf |phylocomr.html✨
phylocomr/json (API)
NEWS

# Install 'phylocomr' in R:

install.packages('phylocomr', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/phylocomr/issues

On CRAN:

phylogeny phylocom phylodiversity community structure character evolution species community-ecology ecology evolution

6.93 score 15 stars 4 packages 19 scripts 263 downloads 13 exports 12 dependencies

Last updated 2 years agofrom:a1937fabaa (on master). Checks:OK: 9. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 28 2024
R-4.5-win-x86_64	OK	Oct 28 2024
R-4.5-linux-x86_64	OK	Oct 28 2024
R-4.4-win-x86_64	OK	Oct 28 2024
R-4.4-mac-x86_64	OK	Oct 28 2024
R-4.4-mac-aarch64	OK	Oct 28 2024
R-4.3-win-x86_64	OK	Oct 28 2024
R-4.3-mac-x86_64	OK	Oct 28 2024
R-4.3-mac-aarch64	OK	Oct 28 2024

Exports:ecovolve ph_aot ph_bladj ph_comdist ph_comdistnt ph_comstruct ph_comtrait ph_ecovolve ph_pd ph_phylomatic ph_rao phylocom phylomatic

Dependencies:cli fansi glue lifecycle magrittr pillar pkgconfig rlang sys tibble utf8 vctrs

Introduction to the phylocomr package

Scott Chamberlain and Jeroen Ooms

Rendered fromphylocomr.Rmdusingknitr::rmarkdownon Oct 28 2024.

Last update: 2022-12-02
Started: 2019-07-23

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Phylocom interface	phylocomr-package phylocomr
Executables	ecovolve executables phylocom phylomatic
aot	ph_aot
bladj	ph_bladj
comdist	ph_comdist ph_comdistnt
comstruct	ph_comstruct
comtrait	ph_comtrait
ecovolve	ph_ecovolve
pd - Faith's index of phylogenetic diversity	ph_pd
phylomatic	ph_phylomatic
rao - Rao's quadratic entropy	ph_rao
Expected inputs	phylocomr-inputs