Package: phylocomr 0.3.4

Luna Luisa Sanchez Reyes

phylocomr: Interface to 'Phylocom'

Interface to 'Phylocom' (<https://phylodiversity.net/phylocom/>), a library for analysis of 'phylogenetic' community structure and character evolution. Includes low level methods for interacting with the three executables, as well as higher level interfaces for methods like 'aot', 'ecovolve', 'bladj', 'phylomatic', and more.

Authors:Jeroen Ooms [aut], Scott Chamberlain [aut], Cam Webb [cph], David Ackerly [cph], Steven Kembel [cph], Luna Luisa Sanchez Reyes [aut, cre]

phylocomr_0.3.4.tar.gz
phylocomr_0.3.4.zip(r-4.7)phylocomr_0.3.4.zip(r-4.6)phylocomr_0.3.4.zip(r-4.5)
phylocomr_0.3.4.tgz(r-4.6-x86_64)phylocomr_0.3.4.tgz(r-4.6-arm64)phylocomr_0.3.4.tgz(r-4.5-x86_64)phylocomr_0.3.4.tgz(r-4.5-arm64)
phylocomr_0.3.4.tar.gz(r-4.7-arm64)phylocomr_0.3.4.tar.gz(r-4.7-x86_64)phylocomr_0.3.4.tar.gz(r-4.6-arm64)phylocomr_0.3.4.tar.gz(r-4.6-x86_64)
phylocomr_0.3.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
phylocomr/json (API)
NEWS

# Install 'phylocomr' in R:
install.packages('phylocomr', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/phylocomr/issues

Pkgdown/docs site:https://docs.ropensci.org

On CRAN:

Conda:

phylogenyphylocomphylodiversitycommunity structurecharacter evolutionspeciescommunity-ecologyecologyevolution

6.88 score 15 stars 4 packages 17 scripts 204 downloads 13 exports 11 dependencies

Last updated from:a1937fabaa (on master). Checks:14 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK116
linux-devel-x86_64OK124
pkgdown docsOK153
source / vignettesOK168
linux-release-arm64OK117
linux-release-x86_64OK128
macos-release-arm64OK77
macos-release-x86_64OK180
macos-oldrel-arm64OK77
macos-oldrel-x86_64OK230
windows-develOK94
windows-releaseOK92
windows-oldrelOK88
wasm-releaseOK109

Exports:ecovolveph_aotph_bladjph_comdistph_comdistntph_comstructph_comtraitph_ecovolveph_pdph_phylomaticph_raophylocomphylomatic

Dependencies:cligluelifecyclemagrittrpillarpkgconfigrlangsystibbleutf8vctrs

Introduction to the phylocomr package

Scott Chamberlain and Jeroen Ooms

Rendered fromphylocomr.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2022-12-02
Started: 2019-07-23

Readme and manuals

Help Manual

Help pageTopics
Phylocom interfacephylocomr-package phylocomr
Executablesecovolve executables phylocom phylomatic
aotph_aot
bladjph_bladj
comdistph_comdist ph_comdistnt
comstructph_comstruct
comtraitph_comtrait
ecovolveph_ecovolve
pd - Faith's index of phylogenetic diversityph_pd
phylomaticph_phylomatic
rao - Rao's quadratic entropyph_rao
Expected inputsphylocomr-inputs