Package: phylocomr 0.3.4

Luna Luisa Sanchez Reyes

phylocomr: Interface to 'Phylocom'

Interface to 'Phylocom' (<https://phylodiversity.net/phylocom/>), a library for analysis of 'phylogenetic' community structure and character evolution. Includes low level methods for interacting with the three executables, as well as higher level interfaces for methods like 'aot', 'ecovolve', 'bladj', 'phylomatic', and more.

Authors:Jeroen Ooms [aut], Scott Chamberlain [aut], Cam Webb [cph], David Ackerly [cph], Steven Kembel [cph], Luna Luisa Sanchez Reyes [aut, cre]

phylocomr_0.3.4.tar.gz
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phylocomr.pdf |phylocomr.html
phylocomr/json (API)
NEWS

# Install 'phylocomr' in R:
install.packages('phylocomr', repos = c('https://packages.ropensci.org', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/phylocomr/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:phylocomr-0.3.4(2023-04-22)

phylogenyphylocomphylodiversitycommunity structurecharacter evolutionspeciescommunity-ecologyecologyevolution

6.81 score 15 stars 3 packages 19 scripts 209 downloads 13 exports 12 dependencies

Last updated 2 years agofrom:a1937fabaa (on master). Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 27 2024
R-4.5-win-x86_64OKDec 27 2024
R-4.5-linux-x86_64OKDec 27 2024
R-4.4-win-x86_64OKDec 27 2024
R-4.4-mac-x86_64OKDec 27 2024
R-4.4-mac-aarch64OKDec 27 2024
R-4.3-win-x86_64OKDec 27 2024
R-4.3-mac-x86_64OKDec 27 2024
R-4.3-mac-aarch64OKDec 27 2024

Exports:ecovolveph_aotph_bladjph_comdistph_comdistntph_comstructph_comtraitph_ecovolveph_pdph_phylomaticph_raophylocomphylomatic

Dependencies:clifansigluelifecyclemagrittrpillarpkgconfigrlangsystibbleutf8vctrs

Introduction to the phylocomr package

Rendered fromphylocomr.Rmdusingknitr::rmarkdownon Dec 27 2024.

Last update: 2022-12-02
Started: 2019-07-23

Citation

To cite package ‘phylocomr’ in publications use:

Ooms J, Chamberlain S, Sanchez Reyes L (2024). phylocomr: Interface to 'Phylocom'. R package version 0.3.4, , https://github.com/ropensci/phylocomr.

Corresponding BibTeX entry:

  @Manual{,
    title = {phylocomr: Interface to 'Phylocom'},
    author = {Jeroen Ooms and Scott Chamberlain and Luna Luisa {Sanchez
      Reyes}},
    year = {2024},
    note = {R package version 0.3.4, },
    url = {https://github.com/ropensci/phylocomr},
  }

Readme and manuals

Help Manual

Help pageTopics
Phylocom interfacephylocomr-package phylocomr
Executablesecovolve executables phylocom phylomatic
aotph_aot
bladjph_bladj
comdistph_comdist ph_comdistnt
comstructph_comstruct
comtraitph_comtrait
ecovolveph_ecovolve
pd - Faith's index of phylogenetic diversityph_pd
phylomaticph_phylomatic
rao - Rao's quadratic entropyph_rao
Expected inputsphylocomr-inputs