Package: rfishbase 4.1.1

Carl Boettiger

rfishbase: R Interface to 'FishBase'

A programmatic interface to 'FishBase', re-written based on an accompanying 'RESTful' API. Access tables describing over 30,000 species of fish, their biology, ecology, morphology, and more. This package also supports experimental access to 'SeaLifeBase' data, which contains nearly 200,000 species records for all types of aquatic life not covered by 'FishBase.'

Authors:Carl Boettiger [cre, aut], Scott Chamberlain [aut], Duncan Temple Lang [aut], Peter Wainwright [aut], Kevin Cazelles [ctb]

rfishbase_4.1.1.tar.gz
rfishbase_4.1.1.zip(r-4.5)rfishbase_4.1.1.zip(r-4.4)rfishbase_4.1.1.zip(r-4.3)
rfishbase_4.1.1.tgz(r-4.4-any)rfishbase_4.1.1.tgz(r-4.3-any)
rfishbase_4.1.1.tar.gz(r-4.5-noble)rfishbase_4.1.1.tar.gz(r-4.4-noble)
rfishbase_4.1.1.tgz(r-4.4-emscripten)rfishbase_4.1.1.tgz(r-4.3-emscripten)
rfishbase.pdf |rfishbase.html
rfishbase/json (API)
NEWS

# Install 'rfishbase' in R:
install.packages('rfishbase', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/rfishbase/issues

Datasets:

On CRAN:

fishfishbasetaxonomy

59 exports 109 stars 4.98 score 48 dependencies 2 dependents 14 mentions 1.1k downloads

Last updated 1 years agofrom:3c44ce068f (on master)

Exports:%>%available_releasesbrainsc_codecommon_namescommon_to_scicountrycountrysubcountrysubrefdb_dirdb_disconnectdietdiet_itemsdistributiondocsecologyecosystemestimatefaoareasfb_connfb_importfb_tablesfb_tblfecundityfishbase_panefooditemsgeneticsintroductionslarvaelength_freqlength_lengthlength_weightload_taxamaturitymorphologymorphometricsoccurrenceoxygenpopcharpopgrowthpoplfpopllpoplwpopqbpredatorsrationreferencesreproductionsci_to_commonspawningspeciesspecies_by_ecosystemspecies_listspecies_namesspeedstocksswimmingsynonymsvalidate_names

Dependencies:askpassbitbit64blobcachemclicliprcontentidcpp11crayoncurlDBIdbplyrdplyrduckdbfansifastmapfsgenericsgluehmshttrjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigprettyunitsprogresspurrrR6readrrlangrstudioapistringistringrsystibbletidyrtidyselecttzdbutf8vctrsvroomwithr

Readme and manuals

Help Manual

Help pageTopics
The new R interface to Fishbase, v2.0rfishbase-package rfishbase
List available releasesavailable_releases
brainsbrains
c_codec_code
common namescommon_names sci_to_common
common_to_scicommon_to_sci
countrycountry
countrysubcountrysub
countrysubrefcountrysubref
show fishbase directorydb_dir
disconnect the databasedb_disconnect
dietdiet
diet_itemsdiet_items
distributiondistribution
docsdocs
ecologyecology
ecosystemecosystem
estimateestimate
faoareasfaoareas
Cacheable database connectionfb_conn
Import tables to local storefb_import
fb_tables list tablesfb_tables
Access a fishbase or sealifebase tablefb_tbl
fecundityfecundity
A table of all the the species found in FishBase, including taxonomic classification and the Species Code (SpecCode) by which the species is identified in FishBase.fishbase
Open database connection pane in RStudiofishbase_pane
fooditemsfooditems
geneticsgenetics
introductionsintroductions
larvaelarvae
length_freqlength_freq poplf
length_lengthlength_length popll
length_weightlength_weight poplw
load_taxaload_taxa
maturitymaturity
morphologymorphology
morphometricsmorphometrics
occurrenceoccurrence
oxygenoxygen
popcharpopchar
popgrowthpopgrowth
popqbpopqb
predatorspredators
rationration
referencesreferences
reproductionreproduction
A table of all the the species found in SeaLifeBase, including taxonomic classification and the Species Code (SpecCode) by which the species is identified in SeaLifeBasesealifebase
spawningspawning
speciesspecies species_info
Species list by ecosystemspecies_by_ecosystem
A list of the species_fields availablespecies_fields
species_listspecies_list
species namesspecies_names
speedspeed
stocksstocks
swimmingswimming
synonymssynonyms
validate_namesvalidate_names