Package: rmangal 2.1.3

Kevin Cazelles

rmangal: 'Mangal' Client

An interface to the 'Mangal' database - a collection of ecological networks. This package includes functions to work with the 'Mangal RESTful API' methods (<https://mangal-interactions.github.io/mangal-api/>).

Authors:Steve Vissault [aut, ctb], Kevin Cazelles [aut, cre], Gabriel Bergeron [aut, ctb], Benjamin Mercier [aut, ctb], Clément Violet [aut, ctb], Dominique Gravel [aut], Timothée Poisot [aut], Thomas Lin Pedersen [rev], Anna Willoughby [rev]

rmangal_2.1.3.tar.gz
rmangal_2.1.3.zip(r-4.5)rmangal_2.1.3.zip(r-4.4)rmangal_2.1.3.zip(r-4.3)
rmangal_2.1.3.tgz(r-4.4-any)rmangal_2.1.3.tgz(r-4.3-any)
rmangal_2.1.3.tar.gz(r-4.5-noble)rmangal_2.1.3.tar.gz(r-4.4-noble)
rmangal_2.1.3.tgz(r-4.4-emscripten)rmangal_2.1.3.tgz(r-4.3-emscripten)
rmangal.pdf |rmangal.html✨
rmangal/json (API)
NEWS

# Install 'rmangal' in R:

install.packages('rmangal', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/rmangal/issues

On CRAN:

ecology networks food webs interactions data publications open access

14 exports 12 stars 1.69 score 22 dependencies 94 downloads

Last updated 7 months agofrom:515b8b3cc7 (on main)

Exports:as.igraph clear_cache_rmangal combine_mgNetworks get_citation get_collection get_network_by_id get_network_by_id_indiv search_datasets search_interactions search_networks search_networks_sf search_nodes search_references search_taxonomy

Dependencies:askpass cachem cli cpp11 curl fastmap glue httr igraph jsonlite lattice lifecycle magrittr Matrix memoise mime openssl pkgconfig R6 rlang sys vctrs

Get started with rmangal

Steve Vissault & Kevin Cazelles

Rendered fromrmangal.Rmdusingknitr::rmarkdownon Jul 05 2024.

Last update: 2024-01-07
Started: 2019-06-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Coerce 'mgNetworksCollection' or 'mgNetwork' objects to 'igraph' objects.	as.igraph.mgNetwork as.igraph.mgNetworksCollection
List interactions type contains in mangal-db	avail_type
Clear memoise cache	clear_cache_rmangal
Combine Mangal networks	combine_mgNetworks
Retrieve all references pertaining to the networks collection or individual network	get_citation get_citation.mgNetwork get_citation.mgNetworksCollection
Get a collection of networks	get_collection get_collection.default get_collection.mgSearchDatasets get_collection.mgSearchInteractions get_collection.mgSearchNetworks get_collection.mgSearchNodes get_collection.mgSearchReferences get_collection.mgSearchTaxonomy
Retrieve network information, nodes, edges and references for a given set of Mangal network IDs	get_network_by_id get_network_by_id_indiv print.mgNetwork print.mgNetworksCollection summary.mgNetwork summary.mgNetworksCollection
Query datasets	search_datasets
Query interactions	search_interactions
Query networks	search_networks search_networks_sf
Query nodes	search_nodes
Query references	search_references
Query taxonomy	search_taxonomy