Package: rmangal 2.1.3

Kevin Cazelles

rmangal: 'Mangal' Client

An interface to the 'Mangal' database - a collection of ecological networks. This package includes functions to work with the 'Mangal RESTful API' methods (<https://mangal-interactions.github.io/mangal-api/>).

Authors:Steve Vissault [aut, ctb], Kevin Cazelles [aut, cre], Gabriel Bergeron [aut, ctb], Benjamin Mercier [aut, ctb], Clément Violet [aut, ctb], Dominique Gravel [aut], Timothée Poisot [aut], Thomas Lin Pedersen [rev], Anna Willoughby [rev]

rmangal_2.1.3.tar.gz
rmangal_2.1.3.zip(r-4.5)rmangal_2.1.3.zip(r-4.4)rmangal_2.1.3.zip(r-4.3)
rmangal_2.1.3.tgz(r-4.4-any)rmangal_2.1.3.tgz(r-4.3-any)
rmangal_2.1.3.tar.gz(r-4.5-noble)rmangal_2.1.3.tar.gz(r-4.4-noble)
rmangal_2.1.3.tgz(r-4.4-emscripten)rmangal_2.1.3.tgz(r-4.3-emscripten)
rmangal.pdf |rmangal.html✨
rmangal/json (API)
NEWS

# Install 'rmangal' in R:
install.packages('rmangal', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/rmangal/issues

On CRAN:

ecologynetworksfood websinteractionsdata publicationsopen access

5.04 score 13 stars 28 scripts 93 downloads 14 exports 22 dependencies

Last updated 10 months agofrom:515b8b3cc7 (on main). Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 28 2024
R-4.5-winOKOct 28 2024
R-4.5-linuxOKOct 28 2024
R-4.4-winOKOct 28 2024
R-4.4-macOKOct 28 2024
R-4.3-winOKOct 28 2024
R-4.3-macOKOct 28 2024

Exports:as.igraphclear_cache_rmangalcombine_mgNetworksget_citationget_collectionget_network_by_idget_network_by_id_indivsearch_datasetssearch_interactionssearch_networkssearch_networks_sfsearch_nodessearch_referencessearch_taxonomy

Dependencies:askpasscachemclicpp11curlfastmapgluehttrigraphjsonlitelatticelifecyclemagrittrMatrixmemoisemimeopensslpkgconfigR6rlangsysvctrs

Get started with rmangal

Steve Vissault & Kevin Cazelles

Rendered fromrmangal.Rmdusingknitr::rmarkdownon Oct 28 2024.

Last update: 2024-01-07
Started: 2019-06-16

Readme and manuals

Help Manual

Help pageTopics
Coerce 'mgNetworksCollection' or 'mgNetwork' objects to 'igraph' objects.as.igraph.mgNetwork as.igraph.mgNetworksCollection
List interactions type contains in mangal-dbavail_type
Clear memoise cacheclear_cache_rmangal
Combine Mangal networkscombine_mgNetworks
Retrieve all references pertaining to the networks collection or individual networkget_citation get_citation.mgNetwork get_citation.mgNetworksCollection
Get a collection of networksget_collection get_collection.default get_collection.mgSearchDatasets get_collection.mgSearchInteractions get_collection.mgSearchNetworks get_collection.mgSearchNodes get_collection.mgSearchReferences get_collection.mgSearchTaxonomy
Retrieve network information, nodes, edges and references for a given set of Mangal network IDsget_network_by_id get_network_by_id_indiv print.mgNetwork print.mgNetworksCollection summary.mgNetwork summary.mgNetworksCollection
Query datasetssearch_datasets
Query interactionssearch_interactions
Query networkssearch_networks search_networks_sf
Query nodessearch_nodes
Query referencessearch_references
Query taxonomysearch_taxonomy