Package: rotl 3.1.0

Francois Michonneau

rotl: Interface to the 'Open Tree of Life' API

An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.

Authors:Francois Michonneau [aut, cre], Joseph Brown [aut], David Winter [aut], Scott Chamberlain [rev]

rotl_3.1.0.tar.gz
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rotl_3.1.0.tgz(r-4.4-any)rotl_3.1.0.tgz(r-4.3-any)
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rotl_3.1.0.tgz(r-4.4-emscripten)rotl_3.1.0.tgz(r-4.3-emscripten)
rotl.pdf |rotl.html✨
rotl/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/ropensci/rotl/issues

On CRAN:

metadataropensciphylogeneticsindependant-contrastsbiodiversitypeer-reviewedphylogenytaxonomy

40 exports 39 stars 5.25 score 26 dependencies 31 dependents 15 mentions 3.7k downloads

Last updated 1 years agofrom:57e800c2b1 (on master)

Exports:candidate_for_synthflagsget_publicationget_studyget_study_metaget_study_subtreeget_study_treeget_study_yearget_tree_idsinspectis_in_treeis_suppressedlist_treesott_idsource_liststrip_ott_idsstudies_find_studiesstudies_find_treesstudies_propertiesstudy_external_IDssynonymstax_lineagetax_nametax_ranktax_sourcestaxon_external_IDstaxonomy_abouttaxonomy_mrcataxonomy_subtreetaxonomy_taxon_infotnrs_contextstnrs_infer_contexttnrs_match_namestol_abouttol_induced_subtreetol_lineagetol_mrcatol_node_infotol_subtreeunique_name

Dependencies:apeaskpassclicrayoncurldigestgluehmshttrjsonlitelatticelifecyclemimenlmeopensslpkgconfigprettyunitsprogressR6RcpprentrezrlangrnclsysvctrsXML