Package: rusda 1.0.8

Franz-Sebastian Krah

rusda: Interface to USDA Databases

An interface to the web service methods provided by the United States Department of Agriculture (USDA). The Agricultural Research Service (ARS) provides a large set of databases. The current version of the package holds interfaces to the Systematic Mycology and Microbiology Laboratory (SMML), which consists of four databases: Fungus-Host Distributions, Specimens, Literature and the Nomenclature database. It provides functions for querying these databases. The main function is \code{associations}, which allows searching for fungus-host combinations.

Authors:Franz-Sebastian Krah

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rusda.pdf |rusda.html✨
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NEWS

# Install 'rusda' in R:
install.packages('rusda', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #18

Bug tracker:https://github.com/ropensci/rusda/issues

Pkgdown site:https://docs.ropensci.org

On CRAN:

Conda:

3.54 score 14 stars 5 scripts 51 downloads 1 mentions 7 exports 134 dependencies

Last updated 4 years agofrom:fb492630f0 (on master). Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 14 2025
R-4.5-winWARNINGMar 14 2025
R-4.5-macWARNINGMar 14 2025
R-4.5-linuxWARNINGMar 14 2025
R-4.4-winWARNINGMar 14 2025
R-4.4-macWARNINGMar 14 2025
R-4.4-linuxWARNINGMar 14 2025
R-4.3-winWARNINGMar 14 2025
R-4.3-macWARNINGMar 14 2025

Exports:associationsgetBPIgetStudyliteraturemeta_smmlsubstratesynonyms_smml

Dependencies:apeaskpassassertthatbackportsbase64encbitbit64bitopsbriobslibcachemcallrcheckmateclicliprclustercodetoolscolorspacecpp11crayoncrulcurldata.tabledescdiffobjdigestdplyrevaluatefansifarverfastmapfastmatchfontawesomeforeachforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgbuildpkgconfigpkgloadplyrpraiseprettyunitsprocessxprogresspspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppRCurlreadrrentrezrexritisrlangrmarkdownrnclrotlrpartrprojrootrredlistrstudioapisassscalessolriumstringistringrsystaxizetestthattibbletidyselecttinytextriebeardtzdburltoolsutf8vctrsviridisviridisLitevroomwaldoWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo