Package: taxadb 0.2.1.99

Carl Boettiger

taxadb: A High-Performance Local Taxonomic Database Interface

Creates a local database of many commonly used taxonomic authorities and provides functions that can quickly query this data.

Authors:Carl Boettiger [aut, cre], Kari Norman [aut], Jorrit Poelen [aut], Scott Chamberlain [aut], Noam Ross [ctb], Mattia Ghilardi [ctb]

taxadb_0.2.1.99.tar.gz
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taxadb_0.2.1.99.tgz(r-4.6-any)taxadb_0.2.1.99.tgz(r-4.5-any)
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taxadb_0.2.1.99.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
taxadb/json (API)

# Install 'taxadb' in R:
install.packages('taxadb', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Reviews:rOpenSci Software Review #344

Bug tracker:https://github.com/ropensci/taxadb/issues

On CRAN:

Conda:

8.11 score 44 stars 2 packages 81 scripts 1.0k downloads 19 exports 36 dependencies

Last updated from:6c2023d7e1 (on master). Checks:7 ERROR, 3 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR151
pkgdown docsOK152
source / vignettesOK175
linux-release-x86_64ERROR156
macos-release-arm64ERROR142
macos-oldrel-arm64ERROR103
windows-develERROR261
windows-releaseERROR271
windows-oldrelERROR249
wasm-releaseOK146

Exports:clean_namescommon_containscommon_starts_withfilter_byfilter_commonfilter_idfilter_namefilter_rankfuzzy_filterget_idsget_namesname_containsname_starts_withtaxa_tbltaxadb_dirtd_connecttd_createtd_disconnecttl_import

Dependencies:askpassblobcachemclicontentidcpp11curlDBIdbplyrdplyrduckdbfastmapfsgenericsgluehttrjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigpurrrR6rlangstringistringrsystibbletidyrtidyselectutf8vctrswithr

Name Providers and schema used in taxadb
Data Schema | Hierarchy Terms | Synonyms | Common names | Linked Data formats | Conventions | Data Processing | Data Versioning
Rendered fromdata-sources.Rmdusingknitr::rmarkdown

Last update: 2022-09-12
Started: 2020-01-24

Backends for taxadb
RSQLite | MonetDBLite & duckdb | in-memory | Manual control of the backend engine | Local storage | Other backends
Rendered frombackends.Rmdusingknitr::rmarkdown

Last update: 2021-04-28
Started: 2020-01-24