Package: taxize 0.9.102
taxize: Taxonomic Information from Around the Web
Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.
Authors:
taxize_0.9.102.tar.gz
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taxize.pdf |taxize.html✨
taxize/json (API)
NEWS
# Install 'taxize' in R: |
install.packages('taxize', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/taxize/issues
- apg_families - MOBOT family names
- apg_orders - MOBOT order names
- plantGenusNames - Vector of plant genus names from ThePlantList
- plantNames - Vector of plant species (genus - specific epithet) names from ThePlantList
- rank_ref - Lookup-table for IDs of taxonomic ranks
- rank_ref_zoo - Lookup-table for IDs of taxonomic ranks
- species_plantarum_binomials - Species names from Species Plantarum
- theplantlist - Lookup-table for family, genus, and species names for ThePlantList
- worrms_ranks - WORMS ranks
taxonomybiologynomenclaturejsonapiwebapi-clientidentifiersspeciesnamesapi-wrapperbiodiversitydarwincoredatataxize
Last updated 5 days agofrom:945e5e3d78 (on master). Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 29 2024 |
R-4.5-win | WARNING | Oct 29 2024 |
R-4.5-linux | WARNING | Oct 29 2024 |
R-4.4-win | WARNING | Oct 29 2024 |
R-4.4-mac | WARNING | Oct 29 2024 |
R-4.3-win | WARNING | Oct 29 2024 |
R-4.3-mac | WARNING | Oct 29 2024 |
Exports:apg_lookupapgFamiliesapgOrdersas.boldidas.colidas.eolidas.gbifidas.iucnas.natservidas.nbnidas.powas.tolidas.tpsidas.tsnas.ubioidas.uidas.wikias.wormsidbold_childrenbold_downstreambold_pingbold_searchchildrenclass2treeclassificationcol_childrencol_classificationcol_downstreamcol_pingcol_searchcomm2scidownstreameol_dataobjectseol_hierarchyeol_invasiveeol_pageseol_pingeol_searcheuboneubon_capabilitieseubon_childreneubon_hierarchyeubon_searchfg_all_updated_namesfg_author_searchfg_deprecated_namesfg_epithet_searchfg_name_by_keyfg_name_full_by_lsidfg_name_searchfg_pinggbif_downstreamgbif_name_usagegbif_parsegbif_pinggenbank2uidget_boldidget_boldid_get_colidget_colid_get_eolidget_eolid_get_gbifidget_gbifid_get_genesget_genes_availget_idsget_ids_get_iucnget_natservidget_natservid_get_nbnidget_nbnid_get_powget_pow_get_seqsget_tolidget_tolid_get_tpsidget_tpsid_get_tsnget_tsn_get_ubioidget_ubioid_get_uidget_uid_get_wikiget_wiki_get_wormsidget_wormsid_getkeygisd_isinvasivegn_parsegni_detailsgni_parsegni_searchgnr_datasourcesgnr_resolveid2nameioniplant_resolveipni_pingipni_searchitis_acceptnameitis_downstreamitis_getrecorditis_hierarchyitis_kingdomnamesitis_lsiditis_nameitis_nativeitis_pingitis_refsitis_taxrankitis_termsiucn_getnameiucn_idiucn_statusiucn_summaryiucn_summary_idlowest_commonnames_listnbn_classificationnbn_pingnbn_searchnbn_synonymsncbi_childrenncbi_downstreamncbi_get_taxon_summaryncbi_getbyidncbi_getbynamencbi_pingncbi_searchphylomatic_formatphylomatic_treeplantminerpow_lookuppow_searchpow_synonymsrankaggresolvesci2commscrapenamesstatus_codessynonymssynonyms_dftax_aggtax_nametax_ranktaxize_capwordstaxize_citetaxize_ldfasttaxize_optionstaxon_cleartaxon_lasttnrstnrs_sourcestol_resolvetp_acceptednamestp_accnamestp_classificationtp_disttp_namedistributionstp_namereferencestp_refstp_searchtp_summarytp_synonymstpl_familiestpl_gettpl_searchtropicos_pingubio_classificationubio_classification_searchubio_idubio_pingubio_searchubio_synonymsupstreamuse_entrezuse_eoluse_iucnuse_tropicosvascan_pingvascan_searchworms_downstream
Dependencies:apeaskpassassertthatbackportsbase64encbitbit64boldbslibcachemcheckmateclicliprclustercodetoolscolorspacecpp11crayoncrulcurldata.tabledigestdplyrevaluatefansifarverfastmapfastmatchfontawesomeforeachforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppreadrrentrezrexritisrlangrmarkdownrnclrotlrpartrredlistrstudioapisassscalessolriumstringistringrsystibbletidyselecttinytextriebeardtzdburltoolsutf8vctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo