| Taxonomic Information from Around the Web | taxize-package taxize |
| Get APG names | apg apgFamilies apgOrders |
| MOBOT family names | apg_families |
| Lookup in the APGIII taxonomy and replace family names | apg_lookup |
| MOBOT order names | apg_orders |
| Retrieve all taxa names downstream in hierarchy for BOLD | bold_downstream |
| Search Barcode of Life for taxonomic IDs | bold_search |
| Retrieve immediate children taxa for a given taxon name or ID. | children children.boldid children.default children.ids children.tsn children.uid children.wormsid |
| Convert a list of classifications to a tree. | class2tree plot.classtree print.classtree |
| Retrieve the taxonomic hierarchy for a given taxon ID. | cbind.classification cbind.classification_ids classification classification.boldid classification.default classification.eolid classification.gbifid classification.ids classification.natservid classification.nbnid classification.pow classification.tolid classification.tpsid classification.tsn classification.uid classification.wiki classification.wormsid rbind.classification rbind.classification_ids |
| Get scientific names from common names. | comm2sci comm2sci.default comm2sci.tsn comm2sci.uid |
| Retrieve the downstream taxa for a given taxon name or ID. | downstream downstream.boldid downstream.default downstream.gbifid downstream.ids downstream.tsn downstream.uid downstream.wormsid |
| Given the identifier for a data object, return all metadata about the object | eol_dataobjects |
| Search for pages in EOL database using a taxonconceptID. | eol_pages |
| Search for terms in EOL database. | eol_search |
| EUBON capabilities | eubon_capabilities |
| EUBON children | eubon_children |
| EUBON hierarchy | eubon_hierarchy |
| EUBON taxonomy search | eubon_search |
| Index Fungorum | fg_all_updated_names fg_author_search fg_deprecated_names fg_epithet_search fg_name_by_key fg_name_full_by_lsid fg_name_search fungorum |
| Retrieve all taxonomic names downstream in hierarchy for GBIF | gbif_downstream |
| Lookup details for specific names in all taxonomies in GBIF. | gbif_name_usage |
| Parse taxon names using the GBIF name parser. | gbif_parse |
| Get NCBI taxonomy UID from GenBankID | genbank2uid |
| Get the BOLD (Barcode of Life) code for a search term. | as.boldid as.boldid.boldid as.boldid.character as.boldid.data.frame as.boldid.list as.boldid.numeric as.data.frame.boldid get_boldid get_boldid_ |
| Get the EOL ID from Encyclopedia of Life from taxonomic names. | as.data.frame.eolid as.eolid as.eolid.character as.eolid.data.frame as.eolid.eolid as.eolid.list as.eolid.numeric get_eolid get_eolid_ |
| Get the GBIF backbone taxon ID from taxonomic names. | as.data.frame.gbifid as.gbifid as.gbifid.character as.gbifid.data.frame as.gbifid.gbifid as.gbifid.list as.gbifid.numeric get_gbifid get_gbifid_ |
| Details on get_*() functions | get_id_details |
| Retrieve taxonomic identifiers for a given taxon name. | get_ids get_ids_ |
| Get a IUCN Redlist taxon | as.data.frame.iucn as.iucn as.iucn.character as.iucn.data.frame as.iucn.iucn as.iucn.list as.iucn.numeric get_iucn |
| Get NatureServe taxonomic ID for a taxon name | as.data.frame.natservid as.natservid as.natservid.character as.natservid.data.frame as.natservid.list as.natservid.natservid as.natservid.numeric get_natservid get_natservid_ |
| Get the UK National Biodiversity Network ID from taxonomic names. | as.data.frame.nbnid as.nbnid as.nbnid.character as.nbnid.data.frame as.nbnid.list as.nbnid.nbnid get_nbnid get_nbnid_ |
| Get Kew's Plants of the World code for a taxon | as.data.frame.pow as.pow as.pow.character as.pow.data.frame as.pow.list as.pow.pow get_pow get_pow_ |
| Get the OTT id for a search term | as.data.frame.tolid as.tolid as.tolid.character as.tolid.data.frame as.tolid.list as.tolid.numeric as.tolid.tolid get_tolid get_tolid_ |
| Get the NameID codes from Tropicos for taxonomic names. | as.data.frame.tpsid as.tpsid as.tpsid.character as.tpsid.data.frame as.tpsid.list as.tpsid.numeric as.tpsid.tpsid get_tpsid get_tpsid_ |
| Get the TSN code for a search term. | as.data.frame.tsn as.tsn as.tsn.character as.tsn.data.frame as.tsn.list as.tsn.numeric as.tsn.tsn get_tsn get_tsn_ |
| Get the UID codes from NCBI for taxonomic names. | as.data.frame.uid as.uid as.uid.character as.uid.data.frame as.uid.list as.uid.numeric as.uid.uid get_uid get_uid_ |
| Get the page name for a Wiki taxon | as.data.frame.wiki as.wiki as.wiki.character as.wiki.data.frame as.wiki.list as.wiki.numeric as.wiki.wiki get_wiki get_wiki_ |
| Get Worms ID for a taxon name | as.data.frame.wormsid as.wormsid as.wormsid.character as.wormsid.data.frame as.wormsid.list as.wormsid.numeric as.wormsid.wormsid get_wormsid get_wormsid_ |
| Function to get API key. | getkey |
| Parse scientific names using Global Names Parser | gn_parse |
| Search for taxonomic name details using the Global Names Index | gni_details |
| Parse scientific names using EOL's name parser. | gni_parse |
| Search for taxonomic names using the Global Names Index | gni_search |
| Global Names Resolver Data Sources | gnr_datasources |
| Resolve names using Global Names Resolver | gnr_resolve |
| Taxonomic IDs to taxonomic names | id2name id2name.boldid id2name.default id2name.gbifid id2name.tolid id2name.tsn id2name.uid id2name.wormsid |
| ION - Index to Organism Names | ion |
| iPlant name resolution | iplant_resolve |
| Search for names in the International Plant Names Index (IPNI). | ipni_search |
| Retrieve accepted TSN and name | itis_acceptname |
| Retrieve all taxa names or TSNs downstream in hierarchy from given TSN. | itis_downstream |
| Get full ITIS record for one or more ITIS TSN's or lsid's. | itis_getrecord |
| ITIS hierarchy | itis_hierarchy |
| Get kingdom names | itis_kingdomnames |
| Get TSN from LSID | itis_lsid |
| Get taxonomic names for a given taxonomic name query. | itis_name |
| Get jurisdiction data, i.e., native or not native in a region. | itis_native |
| Get references related to a ITIS TSN. | itis_refs |
| Retrieve taxonomic rank name from given TSN. | itis_taxrank |
| Get ITIS terms, i.e., tsn's, authors, common names, and scientific names. | itis_terms |
| Get any matching IUCN species names | iucn_getname |
| Get an ID for a IUCN listed taxon | iucn_id |
| Extractor functions for 'iucn'-class. | iucn_status |
| Get a summary from the IUCN Red List | iucn_summary |
| Helpers to set up authentication for the different providers. | key_helpers use_entrez use_iucn use_tropicos |
| Retrieve the lowest common taxon and rank for a given taxon name or ID | lowest_common lowest_common.default lowest_common.gbifid lowest_common.tolid lowest_common.tsn lowest_common.uid |
| Get a random vector of species names. | names_list |
| Search UK National Biodiversity Network database for taxonomic classification | nbn_classification |
| Search UK National Biodiversity Network | nbn_search |
| Return all synonyms for a taxon name with a given id from NBN | nbn_synonyms |
| Search NCBI for children of a taxon | ncbi_children |
| Retrieve all taxa names downstream in hierarchy for NCBI | ncbi_downstream |
| NCBI taxon information from uids | ncbi_get_taxon_summary |
| Ping an API used in taxize to see if it's working. | bold_ping col_ping eol_ping fg_ping gbif_ping ipni_ping itis_ping nbn_ping ncbi_ping ping tropicos_ping vascan_ping |
| Vector of plant genus names from ThePlantList | plantGenusNames |
| Search for taxonomy data from Plantminer.com | plantminer |
| Vector of plant species (genus - specific epithet) names from ThePlantList | plantNames |
| Lookup taxa in Kew's Plants of the World | pow_lookup |
| Search Kew's Plants of the World | pow_search |
| Lookup synonyms in Kew's Plants of the World | pow_synonyms |
| Lookup-table for IDs of taxonomic ranks | rank_ref |
| Lookup-table for IDs of taxonomic ranks (WoRMS) | rank_ref_zoo |
| Aggregate data by given taxonomic rank | rankagg |
| Resolve names from different data sources | resolve |
| Get common names from scientific names. | sci2comm sci2comm.default sci2comm.iucn sci2comm.tsn sci2comm.uid sci2comm.wormsid |
| Resolve names using Global Names Recognition and Discovery. | scrapenames |
| Species names from Species Plantarum | species_plantarum_binomials |
| Get HTTP status codes | status_codes |
| Retrieve synonyms from various sources given input taxonomic names or identifiers | synonyms synonyms.default synonyms.ids synonyms.iucn synonyms.nbnid synonyms.pow synonyms.tpsid synonyms.tsn synonyms.wormsid synonyms_df |
| Aggregate species data to given taxonomic rank | print.tax_agg tax_agg |
| Get taxonomic names for a given rank | tax_name |
| Get rank for a given taxonomic name. | tax_rank |
| Capitalize the first letter of a character string. | taxize_capwords |
| Get citations and licenses for data sources used in taxize | taxize_cite |
| taxize options | taxize_options |
| taxize authentication | authentication taxize-authentication |
| Defunct functions in taxize | defunct taxize-defunct |
| taxize parameters | taxize-params |
| Last taxon state object from a get_* function call | taxon-state taxon_clear taxon_last |
| Lookup-table for family, genus, and species names for ThePlantList | theplantlist |
| Resolve names using Open Tree of Life (OTL) resolver | tol_resolve |
| Return all accepted names for a taxon name with a given id. | tp_accnames |
| Return all distribution records for for a taxon name with a given id. | tp_dist |
| Return all reference records for for a taxon name with a given id. | tp_refs |
| Search Tropicos by scientific name, common name, or Tropicos ID. | tp_search |
| Return summary data a taxon name with a given id. | tp_summary |
| Return all synonyms for a taxon name with a given id. | tp_synonyms |
| Get The Plant List families. | tpl_families |
| Get The Plant List csv files. | tpl_get |
| A light wrapper around the taxonstand fxn to call Theplantlist.org database. | tpl_search |
| uBio ping | ubio_ping |
| Retrieve the upstream taxa for a given taxon name or ID. | upstream upstream.default upstream.ids upstream.tsn |
| Search the CANADENSYS Vascan API. | vascan_search |
| Retrieve all taxa names downstream in hierarchy for WORMS | worms_downstream |
| WORMS ranks | worrms_ranks |
