Package: traits 0.5.1

David LeBauer

traits: Species Trait Data from Around the Web

Species trait data from many different sources, including sequence data from 'NCBI' (<https://www.ncbi.nlm.nih.gov/>), plant trait data from 'BETYdb', data from 'EOL' 'Traitbank', 'Birdlife' International, and more.

Authors:David LeBauer [aut, cre], Scott Chamberlain [aut], Zachary Foster [aut], Ignasi Bartomeus [aut], Chris Black [aut], David Harris [aut], Rupert Collins [ctb]

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traits.pdf |traits.html✨
traits/json (API)
NEWS

# Install 'traits' in R:

install.packages('traits', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/traits/issues

Datasets:

plantatt - PLANTATT plant traits dataset

On CRAN:

traits api web-services species taxonomy api-client

30 exports 39 stars 3.68 score 124 dependencies 9 dependents 909 downloads

Last updated 2 months agofrom:ee58d048b4 (on master)

Exports:betydb_citation betydb_experiment betydb_query betydb_record betydb_search betydb_site betydb_specie betydb_trait birdlife_habitat birdlife_threats coral_locations coral_methodologies coral_resources coral_species coral_taxa coral_traits eol_invasive_fe_native g_invasive is_native leda ncbi_byid ncbi_byname ncbi_searcher taxa_search tr_ernest tr_usda tr_zanne traitbank traits_cache

Dependencies:ape askpass assertthat backports base64enc bit bit64 bold bslib cachem checkmate cli clipr cluster codetools colorspace cpp11 crayon crul curl data.table digest dplyr evaluate fansi farver fastmap fastmatch fontawesome foreach foreign Formula fs generics ggplot2 glue gridExtra gtable highr Hmisc hms hoardr htmlTable htmltools htmlwidgets httpcode httr igraph isoband iterators jquerylib jsonlite knitr labeling lattice lazyeval lifecycle magrittr MASS Matrix memoise mgcv mime munsell natserv nlme nnet openssl pbapply phangorn pillar pkgconfig plyr prettyunits progress purrr quadprog R6 rappdirs ratelimitr RColorBrewer Rcpp readr rentrez rex ritis rlang rmarkdown rncl rotl rpart rredlist rstudioapi rvest sass scales selectr solrium stringi stringr sys taxize tibble tidyselect tinytex triebeard tzdb urltools utf8 vctrs viridis viridisLite vroom WikidataQueryServiceR WikidataR WikipediR wikitaxa withr worrms xfun XML xml2 yaml zoo

BETYdb Tutorial

Scott Chamberlain

Rendered frombetydb.Rmdusingknitr::rmarkdownon Jul 19 2024.

Last update: 2020-08-25
Started: 2015-02-01

traits introduction

Scott Chamberlain

Rendered fromtraits.Rmdusingknitr::rmarkdownon Jul 19 2024.

Last update: 2020-08-26
Started: 2019-06-06

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
traits - Species trait data from around the web	traits-package traits
Search for traits from BETYdb	betydb betydb_citation betydb_experiment betydb_record betydb_site betydb_specie betydb_trait
Query a BETY table	betydb_query betydb_search
Get bird habitat information from BirdLife/IUCN	birdlife_habitat
Get bird threat information from BirdLife/IUCN	birdlife_threats
Access LEDA trait data	leda
Retrieve gene sequences from NCBI by accession number.	ncbi_byid
Retrieve gene sequences from NCBI by taxon name and gene names.	ncbi_byname
Search for gene sequences available for taxa from NCBI.	ncbi_searcher
PLANTATT plant traits dataset	plantatt
Search for traits by taxa names	taxa_search
Amniote life history dataset	tr_ernest
Zanne et al. plant dataset	tr_zanne
Search for traits from EOL's Traitbank	traitbank
Caching	traits_cache
Defunct functions in traits	traits-defunct