Package: treeio 1.31.0
Guangchuang Yu
treeio: Base Classes and Functions for Phylogenetic Tree Input and Output
'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.
Authors:
treeio_1.31.0.tar.gz
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treeio_1.31.0.tgz(r-4.4-any)treeio_1.31.0.tgz(r-4.3-any)
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treeio.pdf |treeio.html✨
treeio/json (API)
NEWS
| # Install 'treeio' in R: |
| install.packages('treeio', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yulab-smu/treeio/issues
On BioConductor:treeio-1.29.2(bioc 3.20)treeio-1.28.0(bioc 3.19)
softwareannotationclusteringdataimportdatarepresentationalignmentmultiplesequencealignmentphylogeneticsexporterparserphylogenetic-trees
Last updated 22 days agofrom:3f53eecb86 (on devel). Checks:OK: 4 NOTE: 3. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | OK | Oct 30 2024 |
| R-4.5-linux | OK | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 30 2024 |
| R-4.4-mac | NOTE | Oct 30 2024 |
| R-4.3-win | NOTE | Oct 30 2024 |
| R-4.3-mac | OK | Oct 30 2024 |
Exports:.data%<>%%>%ancestoras_tibbleas.phyloas.treedatachilddrop.tipfind.hclustfull_joinget.dataget.fieldsget.placementsget.treeget.treetextgetNodeNuminner_joinis.ggtreeis.rootedisTiplabel_branch_pamlmaskmerge_treeMRCANnodeNnode2nodeidnodelabNtipoffspringparentraxml2nwkread.astralread.beastread.beast.newickread.codemlread.codeml_mlcread.fastaread.hyphyread.hyphy.seqread.iqtreeread.jplaceread.jtreeread.mcmctreeread.megaread.mega_tabularread.mrbayesread.newickread.nextstrain.jsonread.nexusread.nhxread.paml_rstread.phylipread.phylip.seqread.phylip.treeread.phyloxmlread.r8sread.raxmlread.treeread.treeqzaread.treetimerename_taxarescale_treerootrootnodertreespttibbletreedatawrite.beastwrite.beast.newickwrite.jplacewrite.jtreewrite.nexuswrite.tree
Dependencies:apeclicpp11digestdplyrfansifsgenericsgluejsonlitelatticelazyevallifecyclemagrittrnlmepillarpkgconfigpurrrR6Rcpprlangstringistringrtibbletidyrtidyselecttidytreeutf8vctrswithryulab.utils
