Package: allodb 0.0.1.9000

Erika Gonzalez-Akre

allodb: Tree Biomass Estimation at Extra-Tropical Forest Plots

Standardize and simplify the tree biomass estimation process across globally distributed extratropical forests.

Authors:Erika Gonzalez-Akre [aut, cre, cph], Camille Piponiot [aut], Mauro Lepore [aut], Kristina Anderson-Teixeira [aut], Jeffrey Hanson [rev], Jonas Stillhard [rev]

allodb_0.0.1.9000.tar.gz
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allodb.pdf |allodb.html✨
allodb/json (API)

# Install 'allodb' in R:

install.packages('allodb', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/allodb/issues

Pkgdown site:https://docs.ropensci.org

Datasets:

equations - Tables of allometric equations and associated metadata
equations_metadata - Tables of allometric equations and associated metadata
genus_family - Genus and family table for selected ForestGEO sites
gymno_genus - Gymnosperms identified in selected ForestGEO sites
koppenMatrix - Koppen climate classification matrix
missing_values - Explanations of missing values codes
references - Equation references and associated metadata
references_metadata - Equation references and associated metadata
scbi_stem1 - Tree census data from SCBI ForestGEO plot
shrub_species - Shrub species identified in selected ForestGEO sites
sites_info - ForestGEO sites used in allodb
sitespecies - Sites and tree species used in allodb and associated metadata
sitespecies_metadata - Sites and tree species used in allodb and associated metadata

On CRAN:

5.45 score 38 stars 37 scripts 6 exports 29 dependencies

Last updated 3 years agofrom:4207f86164 (on master). Checks:3 OK, 4 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 15 2025
R-4.5-win	OK	Jan 15 2025
R-4.5-linux	OK	Jan 15 2025
R-4.4-win	NOTE	Jan 15 2025
R-4.4-mac	NOTE	Jan 15 2025
R-4.3-win	NOTE	Jan 15 2025
R-4.3-mac	NOTE	Jan 15 2025

Exports:est_params get_biomass illustrate_allodb new_equations resample_agb weight_allom

Dependencies:cli colorspace data.table fansi farver ggplot2 glue gtable isoband labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer rlang scales tibble utf8 vctrs viridisLite withr

Using allodb to estimate aboveground biomass

Rendered fromallodb.Rmdusingknitr::rmarkdownon Jan 15 2025.

Last update: 2021-10-06
Started: 2021-10-06

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Tables of allometric equations and associated metadata	equations equations_metadata
Calibrate new allometric equations	est_params
Genus and family table for selected ForestGEO sites	genus_family
Compute tree aboveground biomass (AGB) based on allometric equations	get_biomass
Gymnosperms identified in selected ForestGEO sites	gymno_genus
Illustrate the resampling of AGB values used in _allodb_	illustrate_allodb
Koppen climate classification matrix	koppenMatrix
Explanations of missing values codes	missing_values
Modify the original equation table	new_equations
Equation references and associated metadata	references references_metadata
Resample _allodb_ equations to calibrate new allometries	resample_agb
Tree census data from SCBI ForestGEO plot	scbi_stem1
Shrub species identified in selected ForestGEO sites	shrub_species
ForestGEO sites used in allodb	sites_info
Sites and tree species used in allodb and associated metadata	sitespecies sitespecies_metadata
Attribute weights to equations	weight_allom