Installation | Load the census data | Load and modify the equation table | Subset the equation table | Add new equations | Estimate the aboveground biomass | How AGB is estimated | Attribute a weight to each equation in the equation table for each taxon/location combination | Resample equations | Calibrate a new equation for each taxon/location combination | Visualize the recalibration of equations
Package: allodb 0.0.1.9000
Erika Gonzalez-Akre
allodb: Tree Biomass Estimation at Extra-Tropical Forest Plots
Standardize and simplify the tree biomass estimation process across globally distributed extratropical forests.
Authors:
allodb_0.0.1.9000.tar.gz
allodb_0.0.1.9000.zip(r-4.7)allodb_0.0.1.9000.zip(r-4.6)allodb_0.0.1.9000.zip(r-4.5)
allodb_0.0.1.9000.tgz(r-4.6-any)allodb_0.0.1.9000.tgz(r-4.5-any)
allodb_0.0.1.9000.tar.gz(r-4.7-any)allodb_0.0.1.9000.tar.gz(r-4.6-any)
allodb_0.0.1.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
allodb/json (API)
| # Install 'allodb' in R: |
| install.packages('allodb', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Reviews:rOpenSci Software Review #436
Bug tracker:https://github.com/ropensci/allodb/issues
Pkgdown/docs site:https://docs.ropensci.org
Datasets:
- equations - Tables of allometric equations and associated metadata
- equations_metadata - Tables of allometric equations and associated metadata
- genus_family - Genus and family table for selected ForestGEO sites
- gymno_genus - Gymnosperms identified in selected ForestGEO sites
- koppenMatrix - Koppen climate classification matrix
- missing_values - Explanations of missing values codes
- references - Equation references and associated metadata
- references_metadata - Equation references and associated metadata
- scbi_stem1 - Tree census data from SCBI ForestGEO plot
- shrub_species - Shrub species identified in selected ForestGEO sites
- sites_info - ForestGEO sites used in allodb
- sitespecies - Sites and tree species used in allodb and associated metadata
- sitespecies_metadata - Sites and tree species used in allodb and associated metadata
Last updated from:1cfe846eb4 (on master). Checks:10 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 139 | ||
| pkgdown docs | OK | 243 | ||
| source / vignettes | OK | 213 | ||
| linux-release-x86_64 | OK | 132 | ||
| macos-release-arm64 | OK | 80 | ||
| macos-oldrel-arm64 | OK | 90 | ||
| windows-devel | OK | 87 | ||
| windows-release | OK | 122 | ||
| windows-oldrel | OK | 82 | ||
| wasm-release | OK | 118 |
Exports:est_paramsget_biomassillustrate_allodbnew_equationsresample_agbweight_allom
Dependencies:clicpp11data.tablefarverggplot2gluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigR6RColorBrewerrlangS7scalestibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Tables of allometric equations and associated metadata | equations equations_metadata |
| Calibrate new allometric equations | est_params |
| Genus and family table for selected ForestGEO sites | genus_family |
| Compute tree aboveground biomass (AGB) based on allometric equations | get_biomass |
| Gymnosperms identified in selected ForestGEO sites | gymno_genus |
| Illustrate the resampling of AGB values used in _allodb_ | illustrate_allodb |
| Koppen climate classification matrix | koppenMatrix |
| Explanations of missing values codes | missing_values |
| Modify the original equation table | new_equations |
| Equation references and associated metadata | references references_metadata |
| Resample _allodb_ equations to calibrate new allometries | resample_agb |
| Tree census data from SCBI ForestGEO plot | scbi_stem1 |
| Shrub species identified in selected ForestGEO sites | shrub_species |
| ForestGEO sites used in allodb | sites_info |
| Sites and tree species used in allodb and associated metadata | sitespecies sitespecies_metadata |
| Attribute weights to equations | weight_allom |