Package: mcbette 1.15.2

Richèl J.C. Bilderbeek

mcbette: Model Comparison Using 'babette'

'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'mcbette' allows to do a Bayesian model comparison over some site and clock models, using 'babette' (<https://github.com/ropensci/babette/>).

Authors:Richèl J.C. Bilderbeek [aut, cre], Joëlle Barido-Sottani [rev], Vikram Baliga [rev]

mcbette_1.15.2.tar.gz
mcbette_1.15.2.zip(r-4.5)mcbette_1.15.2.zip(r-4.4)mcbette_1.15.2.zip(r-4.3)
mcbette_1.15.2.tgz(r-4.4-any)mcbette_1.15.2.tgz(r-4.3-any)
mcbette_1.15.2.tar.gz(r-4.5-noble)mcbette_1.15.2.tar.gz(r-4.4-noble)
mcbette_1.15.2.tgz(r-4.4-emscripten)mcbette_1.15.2.tgz(r-4.3-emscripten)
mcbette.pdf |mcbette.html
mcbette/json (API)

# Install mcbette in R:
install.packages('mcbette', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/mcbette/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On CRAN:

15 exports 7 stars 1.16 score 130 dependencies 74 downloads

Last updated 9 months agofrom:7d8139ba50d3a6f563690cee9146675bbcb61b3b (via master)

Exports:calc_weightscan_run_mcbettecheck_beast2_ns_pkgcheck_marg_likscheck_mcbette_stateest_marg_likest_marg_liksget_mcbette_stateget_test_marg_liksinterpret_bayes_factorinterpret_marg_lik_estimatesmcbette_reportmcbette_self_testplot_marg_liksset_mcbette_state

Dependencies:ade4apeaskpassbabettebase64encbeastierbeautierbitbit64brewbriobslibcachemcallrclicliprcommonmarkcpp11crayoncredentialscurldescdevtoolsdiffobjdigestdownlitellipsisevaluatefansifastmapfastmatchfontawesomefsgenericsgertghgitcredsgluegmphighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2igraphinijquerylibjsonliteknitrlaterlatticelifecyclemagrittrMASSMatrixmauricermemoisemimeminiUInlmeopensslphangornpillarpixmappkgbuildpkgconfigpkgdownpkgloadpraiseprettyunitsprocessxprofvisprogresspromisespspurrrquadprogR6raggrappdirsrcmdcheckRcppRcppArmadilloreadrrematch2remotesrJavarlangrmarkdownRmpfrroxygen2rprojrootrstudioapirversionssasssegmentedseqinrsessioninfoshinysourcetoolsspstringistringrsyssystemfontstestittestthattextshapingtibbletidyselecttinytextracerertxtplottzdburlcheckerusethisutf8vctrsvroomwaldowhiskerwithrxfunxml2xopenxtableyamlzip

Demo

Rendered fromdemo.Rmdusingknitr::rmarkdownon Jun 12 2024.

Last update: 2022-08-26
Started: 2020-01-14