Package: onekp 0.3.0

Dhakal Rijan

onekp: Retrieve Data from the 1000 Plants Initiative (1KP)

The 1000 Plants Initiative (www.onekp.com) has sequenced the transcriptomes of over 1000 plant species. This package allows these sequences and metadata to be retrieved and filtered by code, species or recursively by clade. Scientific names and NCBI taxonomy IDs are both supported.

Authors:Dhakal Rijan [aut, cre], Zebulun Arendsee [aut], Zachary Foster [rev], Jessica Minnier [rev], Joel Nitta [ctb]

onekp_0.3.0.tar.gz
onekp_0.3.0.zip(r-4.5)onekp_0.3.0.zip(r-4.4)onekp_0.3.0.zip(r-4.3)
onekp_0.3.0.tgz(r-4.4-any)onekp_0.3.0.tgz(r-4.3-any)
onekp_0.3.0.tar.gz(r-4.5-noble)onekp_0.3.0.tar.gz(r-4.4-noble)
onekp_0.3.0.tgz(r-4.4-emscripten)onekp_0.3.0.tgz(r-4.3-emscripten)
onekp.pdf |onekp.html
onekp/json (API)
NEWS

# Install onekp in R:
install.packages('onekp', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/onekp/issues

Datasets:
  • onekp - OneKP metadata file

On CRAN:

7 exports 12 stars 1.38 score 54 dependencies

Last updated 1 years agofrom:6d9f0241194c0cb5d4e1c6422c0444d0d343e76e (via master)

Exports:%>%download_nucleotidesdownload_peptidesfilter_by_cladefilter_by_codefilter_by_speciesretrieve_onekp

Dependencies:askpassbitbit64blobcachemclicliprcpp11crayoncurldata.tableDBIdbplyrdigestdplyrfansifastmapgenericsgluehmshoardrhttrjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrprettyunitsprogresspurrrR6rappdirsreadrrlangRSQLitervestselectrstringistringrsystaxizedbtibbletidyrtidyselecttzdbutf8vctrsvroomwithrxml2

Readme and manuals

Help Manual

Help pageTopics
Download a datasetdownload download_nucleotides download_peptides
Filter a OneKP objectfilter filter_by_clade filter_by_code filter_by_species
OneKP metadata fileonekp
OneKP print generic functionprint.OneKP
Retrieve data from 1KPretrieve_onekp