Package: onekp 0.3.0

Dhakal Rijan

onekp: Retrieve Data from the 1000 Plants Initiative (1KP)

The 1000 Plants Initiative (www.onekp.com) has sequenced the transcriptomes of over 1000 plant species. This package allows these sequences and metadata to be retrieved and filtered by code, species or recursively by clade. Scientific names and NCBI taxonomy IDs are both supported.

Authors:Dhakal Rijan [aut, cre], Zebulun Arendsee [aut], Zachary Foster [rev], Jessica Minnier [rev], Joel Nitta [ctb]

onekp_0.3.0.tar.gz
onekp_0.3.0.zip(r-4.5)onekp_0.3.0.zip(r-4.4)onekp_0.3.0.zip(r-4.3)
onekp_0.3.0.tgz(r-4.5-any)onekp_0.3.0.tgz(r-4.4-any)onekp_0.3.0.tgz(r-4.3-any)
onekp_0.3.0.tar.gz(r-4.5-noble)onekp_0.3.0.tar.gz(r-4.4-noble)
onekp_0.3.0.tgz(r-4.4-emscripten)onekp_0.3.0.tgz(r-4.3-emscripten)
onekp.pdf |onekp.html✨
onekp/json (API)
NEWS

# Install 'onekp' in R:
install.packages('onekp', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/onekp/issues

Pkgdown site:https://docs.ropensci.org

Datasets:
  • onekp - OneKP metadata file

On CRAN: no

Conda:

2.81 score 13 stars 4 scripts 7 exports 127 dependencies

Last updated 2 years agofrom:6d9f024119 (on master). Checks:1 ERROR, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesFAILMar 04 2025
R-4.5-winWARNINGMar 04 2025
R-4.5-macWARNINGMar 04 2025
R-4.5-linuxWARNINGMar 04 2025
R-4.4-winWARNINGMar 04 2025
R-4.4-macWARNINGMar 04 2025
R-4.4-linuxWARNINGMar 04 2025
R-4.3-winWARNINGMar 04 2025
R-4.3-macWARNINGMar 04 2025

Exports:%>%download_nucleotidesdownload_peptidesfilter_by_cladefilter_by_codefilter_by_speciesretrieve_onekp

Dependencies:apeaskpassassertthatbackportsbase64encbitbit64blobbslibcachemcheckmateclicliprclustercolorspacecpp11crayoncrulcurldata.tableDBIdbplyrdigestdplyrevaluatefansifarverfastmapfastmatchfontawesomeforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshoardrhtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgconfigplogrplyrprettyunitsprogresspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppreadrrentrezrexritisrlangrmarkdownrnclrotlrpartrredlistRSQLiterstudioapirvestsassscalesselectrsolriumstringistringrsystaxizetaxizedbtibbletidyrtidyselecttinytextriebeardtzdburltoolsutf8vctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo

Readme and manuals

Help Manual

Help pageTopics
Download a datasetdownload download_nucleotides download_peptides
Filter a OneKP objectfilter filter_by_clade filter_by_code filter_by_species
OneKP metadata fileonekp
OneKP print generic functionprint.OneKP
Retrieve data from 1KPretrieve_onekp