Package: onekp 0.3.0
Dhakal Rijan
onekp: Retrieve Data from the 1000 Plants Initiative (1KP)
The 1000 Plants Initiative (www.onekp.com) has sequenced the transcriptomes of over 1000 plant species. This package allows these sequences and metadata to be retrieved and filtered by code, species or recursively by clade. Scientific names and NCBI taxonomy IDs are both supported.
Authors:
onekp_0.3.0.tar.gz
onekp_0.3.0.zip(r-4.5)onekp_0.3.0.zip(r-4.4)onekp_0.3.0.zip(r-4.3)
onekp_0.3.0.tgz(r-4.4-any)onekp_0.3.0.tgz(r-4.3-any)
onekp_0.3.0.tar.gz(r-4.5-noble)onekp_0.3.0.tar.gz(r-4.4-noble)
onekp_0.3.0.tgz(r-4.4-emscripten)onekp_0.3.0.tgz(r-4.3-emscripten)
onekp.pdf |onekp.html✨
onekp/json (API)
NEWS
| # Install 'onekp' in R: |
| install.packages('onekp', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ropensci/onekp/issues
- onekp - OneKP metadata file
Last updated 2 years agofrom:6d9f024119 (on master). Checks:ERROR: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Sep 28 2024 |
| R-4.5-win | WARNING | Sep 28 2024 |
| R-4.5-linux | WARNING | Sep 28 2024 |
| R-4.4-win | WARNING | Sep 28 2024 |
| R-4.4-mac | WARNING | Sep 28 2024 |
| R-4.3-win | WARNING | Sep 28 2024 |
| R-4.3-mac | WARNING | Sep 28 2024 |
Exports:%>%download_nucleotidesdownload_peptidesfilter_by_cladefilter_by_codefilter_by_speciesretrieve_onekp
Dependencies:askpassbitbit64blobcachemclicliprcpp11crayoncurldata.tableDBIdbplyrdigestdplyrfansifastmapgenericsgluehmshoardrhttrjsonlitelifecyclemagrittrmemoisemimeopensslpillarpkgconfigplogrprettyunitsprogresspurrrR6rappdirsreadrrlangRSQLitervestselectrstringistringrsystaxizedbtibbletidyrtidyselecttzdbutf8vctrsvroomwithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Download a dataset | download download_nucleotides download_peptides |
| Filter a OneKP object | filter filter_by_clade filter_by_code filter_by_species |
| OneKP metadata file | onekp |
| OneKP print generic function | print.OneKP |
| Retrieve data from 1KP | retrieve_onekp |