Package: phylogram 2.1.0.9000
Shaun Wilkinson
phylogram: Dendrograms for Evolutionary Analysis
Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.
Authors:
phylogram_2.1.0.9000.tar.gz
phylogram_2.1.0.9000.zip(r-4.5)phylogram_2.1.0.9000.zip(r-4.4)phylogram_2.1.0.9000.zip(r-4.3)
phylogram_2.1.0.9000.tgz(r-4.5-any)phylogram_2.1.0.9000.tgz(r-4.4-any)phylogram_2.1.0.9000.tgz(r-4.3-any)
phylogram_2.1.0.9000.tar.gz(r-4.5-noble)phylogram_2.1.0.9000.tar.gz(r-4.4-noble)
phylogram_2.1.0.9000.tgz(r-4.4-emscripten)phylogram_2.1.0.9000.tgz(r-4.3-emscripten)
phylogram.pdf |phylogram.html✨
phylogram/json (API)
| # Install 'phylogram' in R: |
| install.packages('phylogram', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org')) |
Reviews:rOpenSci Software Review #212
Bug tracker:https://github.com/ropensci/phylogram/issues
Pkgdown site:https://docs.ropensci.org
On CRAN:phylogram-2.1.0(2018-06-25)
Conda:r-phylogram-2.1.0(2025-03-25)
Last updated 5 years agofrom:9b7ce7672a (on master). Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 14 2025 |
| R-4.5-win | OK | Mar 14 2025 |
| R-4.5-mac | OK | Mar 14 2025 |
| R-4.5-linux | OK | Mar 14 2025 |
| R-4.4-win | OK | Mar 14 2025 |
| R-4.4-mac | OK | Mar 14 2025 |
| R-4.4-linux | OK | Mar 14 2025 |
| R-4.3-win | OK | Mar 14 2025 |
| R-4.3-mac | OK | Mar 14 2025 |
Exports:as.cladogramas.dendrogramas.dendrogram.phyloas.phyloas.phylo.dendrogramladderpruneread.dendrogramremidpointrepositionwrite.dendrogram
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Apply unweighted branch lengths. | as.cladogram |
| Convert a "phylo" object to a dendrogram. | as.dendrogram.phylo |
| Convert a dendrogram to a "phylo" object. | as.phylo.dendrogram |
| Reorder tree branches in ladderized pattern. | ladder |
| Dendrograms for evolutionary analysis. | phylogram-package phylogram |
| Remove tree nodes by regular expression pattern matching. | prune |
| Read a dendrogram from parenthetic text. | read.dendrogram |
| Set dendrogram attributes for a nested list. | remidpoint |
| Reset dendrogram height attributes. | reposition |
| Write a dendrogram object to parenthetic text. | write.dendrogram |
