Package: spiro 0.2.1.9000

Simon Nolte

spiro: Manage Data from Cardiopulmonary Exercise Testing

Import, process, summarize and visualize raw data from metabolic carts. See Robergs, Dwyer, and Astorino (2010) <doi:10.2165/11319670-000000000-00000> for more details on data processing.

Authors:Simon Nolte [aut, cre], Manuel Ramon [rev], James Hunter [rev]

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spiro.pdf |spiro.html✨
spiro/json (API)
NEWS

# Install 'spiro' in R:

install.packages('spiro', repos = c('https://ropensci.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ropensci/spiro/issues

On CRAN:

20 exports 12 stars 1.92 score 45 dependencies 243 downloads

Last updated 15 days agofrom:ab65b42644 (on main)

Exports:add_bodymass add_hr add_protocol bw_filter get_anonid get_protocol pt_const pt_pre pt_steps pt_wu set_protocol set_protocol_manual spiro spiro_example spiro_import spiro_max spiro_plot spiro_raw spiro_smooth spiro_summary

Dependencies:cellranger cli colorspace cowplot cpp11 crayon digest evaluate fansi farver ggplot2 glue gtable highr hms isoband knitr labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig prettyunits progress R6 RColorBrewer readxl rematch rlang scales signal tibble utf8 vctrs viridisLite withr xfun xml2 yaml

Import & Processing

Rendered fromimport_processing.Rmdusingknitr::rmarkdownon Jul 12 2024.

Last update: 2023-07-24
Started: 2021-04-09

Summarizing & Plotting

Rendered fromsummarizing_plotting.Rmdusingknitr::rmarkdownon Jul 12 2024.

Last update: 2023-05-09
Started: 2021-11-24

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Calculate additional variables related to body mass for cardiopulmonary exercise testing data	add_bodymass
Import and add heart rate data to cardiopulmonary exercise testing data	add_hr
Add a test protocol to an exercise testing data set	add_protocol
Smooth data with a (zero-phase) Butterworth filter	bw_filter
Get the anonymization id from personal data	get_anonid
Guess a test protocol from a corresponding exercise testing data set	get_protocol
Printing spiro data frames in a knitr context	knit_print.spiro
Printing spiro data frames	print.spiro
Setting an exercise testing profile	pt_const pt_pre pt_steps pt_wu set_protocol
Manually setting a testing profile	set_protocol_manual set_protocol_manual.data.frame set_protocol_manual.default
Import and process raw data from metabolic carts/spiroergometric measures	spiro
Get path to spiro example	spiro_example
Import raw data from spiroergometric devices (deprecated)	spiro_import
Return maximum values from cardiopulmonary exercise tests	spiro_max
Plot data from cardiopulmonary exercise data files	spiro_plot
Get raw data from a metabolic cart file or an imported spiro object	spiro_raw spiro_raw.default spiro_raw.spiro
Apply a smoothing filter to data from cardiopulmonary exercise testing.	spiro_smooth
Summarize data from cardiopulmonary exercise testing for each load step	spiro_summary